View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_15 (Length: 308)
Name: NF17749_low_15
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_15 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 41271323 - 41271636
Alignment:
| Q |
1 |
acatgattaagaatccatgaataaaaaagaagtaatacaatgaatgatcctggccacaacattgctctggtaatcacaaaattttgtgagataatacgac |
100 |
Q |
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| T |
41271323 |
acatgattaagaatccatgaataaaaaagaagtaatacaatgaatgatcctggccaaaacattgctctggtaatcacaaaattttgtgagataatacgac |
41271422 |
T |
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| Q |
101 |
gttatgtcttatgcatgtgaatggatcctctcactaaagtacataagtcaccaacacatttcggggttaaatctgatacccttccctgaattattaaatg |
200 |
Q |
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| T |
41271423 |
gttatgtcttatgcatgtgaatggatcctctcactaaagtacataagtcaccaacacatttcggggttaaatctgatacccttccctgaattattaaatg |
41271522 |
T |
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| Q |
201 |
atagcatgcaatgattacaaaccaataggcagatc------agnnnnnnnnnctaaagatccattcttaagggcgaacgaggaagctcacaggcacaact |
294 |
Q |
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| T |
41271523 |
atagcatgcaatgattacaaaccaataggcagatcagaaaaagaaaaaaaaactaaagatccattcttaagggcgaacgaggaagctcacaggcacaact |
41271622 |
T |
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| Q |
295 |
aagtaatcatctga |
308 |
Q |
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| T |
41271623 |
aagtaatcatctga |
41271636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 56536720 - 56536678
Alignment:
| Q |
266 |
ggcgaacgaggaagctcacaggcacaactaagtaatcatctga |
308 |
Q |
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| T |
56536720 |
ggcgaaagaggaagttcacaggcacaactaagtaatcatctga |
56536678 |
T |
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