View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17749_low_18 (Length: 264)

Name: NF17749_low_18
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17749_low_18
NF17749_low_18
[»] chr1 (4 HSPs)
chr1 (1-248)||(965672-965919)
chr1 (63-247)||(18172176-18172363)
chr1 (27-73)||(12252467-12252513)
chr1 (144-188)||(18548091-18548135)
[»] chr3 (2 HSPs)
chr3 (129-188)||(5700869-5700928)
chr3 (144-188)||(8354343-8354387)
[»] chr8 (2 HSPs)
chr8 (42-113)||(11405784-11405855)
chr8 (144-188)||(26588322-26588366)
[»] chr2 (2 HSPs)
chr2 (42-113)||(42436358-42436429)
chr2 (144-188)||(1979829-1979873)
[»] chr7 (1 HSPs)
chr7 (27-73)||(6015735-6015781)
[»] chr5 (1 HSPs)
chr5 (144-188)||(14460345-14460389)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 965672 - 965919
Alignment:
Q  1 ttaattttaacaaataaaaggaagacatcattaacaaaatgttagagattataaaaatcatgtcattgtatatcgatgaaatggatacaacttaatatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  965672 ttaattttaacaaataaaaggaagacatcattaacaaaatgttagagattataaaaagcatgtcattgtatatcgatgaaatggatacaacttaatatcg 965771  T
Q  101 aagacttacaattgctttcgatatggcttcatattttaaatatgttgtaagattttttcattttcaacattatccaatgtatcactctatatatgttgct 200  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  965772 aagacttataattgctttcggtatggcttcatattttaaatatgttgtaagattttttcattttcaacattatccaatgtatcactctatatatgttgct 965871  T
Q  201 tgacaatcattcaaaaattcacctcaatatggttctgcaattgattct 248  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  965872 tgacgatcattcaaaaattcacctcaatatggtcctgcaattgattct 965919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 247
Target Start/End: Complemental strand, 18172363 - 18172176
Alignment:
Q  63 tcattgtatatcgatgaaatggatacaa----cttaatatcgaagacttacaattgctttcgatatggcttcatattttaaatatgttgtaagatttttt 158  Q
    ||||||||||||||| ||||  ||||||    |||||||||||||| ||||||||||| ||| ||||||||||| |||||||| |||| |||||||||||    
T  18172363 tcattgtatatcgataaaataaatacaataatcttaatatcgaagaattacaattgctctcggtatggcttcatgttttaaatgtgttctaagatttttt 18172264  T
Q  159 cattttcaacattatccaatgtatcactctatatatgttgcttgacaatcattcaaaaattcacct-caatatggttctgcaattgattc 247  Q
    ||||||||||||||| ||||||||||  ||||||||||||   ||||||||||| ||||||||||| | |||||||  ||||||||||||    
T  18172263 cattttcaacattatgcaatgtatca--ctatatatgttgtccgacaatcattccaaaattcacctcccatatggtcgtgcaattgattc 18172176  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 12252513 - 12252467
Alignment:
Q  27 atcattaacaaaatgttagagattataaaaatcatgtcattgtatat 73  Q
    ||||||||| |||  |||||||||| |||||||||||||||||||||    
T  12252513 atcattaaccaaaaattagagattaaaaaaatcatgtcattgtatat 12252467  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 18548091 - 18548135
Alignment:
Q  144 gttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||| ||||||||||||||||||||| |||| ||| |||||||||    
T  18548091 gttgcaagattttttcattttcaacactatcaaatatatcactct 18548135  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 188
Target Start/End: Complemental strand, 5700928 - 5700869
Alignment:
Q  129 tcatattttaaatatgttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||||||||||| | |||||||||||||||||||||||||| |||| ||| || ||||||    
T  5700928 tcatattttaaaaacgttgtaagattttttcattttcaacactatcaaatataccactct 5700869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 8354343 - 8354387
Alignment:
Q  144 gttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||| ||||||||||||||||||||| |||| ||| |||||||||    
T  8354343 gttgcaagattttttcattttcaacactatcaaatatatcactct 8354387  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 11405855 - 11405784
Alignment:
Q  42 ttagagattataaaaatcatgtcattgtatatcgatgaaatggatacaacttaatatcgaagacttacaatt 113  Q
    |||||||||| |||||||||||||||||||||   | |||||   |||||||||||| ||||| ||||||||    
T  11405855 ttagagattacaaaaatcatgtcattgtatatacgtaaaatgaggacaacttaatattgaagaattacaatt 11405784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 26588322 - 26588366
Alignment:
Q  144 gttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||| ||||||||||||||||||||| |||| ||| |||||||||    
T  26588322 gttgcaagattttttcattttcaacactatcaaatatatcactct 26588366  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 42436429 - 42436358
Alignment:
Q  42 ttagagattataaaaatcatgtcattgtatatcgatgaaatggatacaacttaatatcgaagacttacaatt 113  Q
    |||||||||| |||||||||||||||||||||   | |||||   |||||||||||| ||||| ||||||||    
T  42436429 ttagagattacaaaaatcatgtcattgtatatacgtaaaatgaggacaacttaatattgaagaattacaatt 42436358  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Complemental strand, 1979873 - 1979829
Alignment:
Q  144 gttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||| ||||||||||||||||||||| |||| ||| |||||||||    
T  1979873 gttgcaagattttttcattttcaacactatcaaatatatcactct 1979829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 6015781 - 6015735
Alignment:
Q  27 atcattaacaaaatgttagagattataaaaatcatgtcattgtatat 73  Q
    ||||||||| |||  |||||||||| |||||||||||||||||||||    
T  6015781 atcattaaccaaaaattagagattaaaaaaatcatgtcattgtatat 6015735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 14460345 - 14460389
Alignment:
Q  144 gttgtaagattttttcattttcaacattatccaatgtatcactct 188  Q
    |||| ||||||||||||||||||||| |||| ||| |||||||||    
T  14460345 gttgcaagattttttcattttcaacactatcaaatatatcactct 14460389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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