View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17749_low_19 (Length: 262)

Name: NF17749_low_19
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17749_low_19
NF17749_low_19
[»] chr3 (47 HSPs)
chr3 (18-262)||(2491897-2492141)
chr3 (68-254)||(2631222-2631408)
chr3 (18-255)||(2476452-2476686)
chr3 (18-262)||(7324423-7324661)
chr3 (21-255)||(2659151-2659379)
chr3 (159-262)||(7442969-7443072)
chr3 (67-254)||(9594624-9594811)
chr3 (68-254)||(768329-768515)
chr3 (23-111)||(2474926-2475014)
chr3 (72-255)||(2644361-2644544)
chr3 (18-262)||(9561977-9562215)
chr3 (68-255)||(7334238-7334425)
chr3 (72-255)||(2502017-2502200)
chr3 (204-255)||(754608-754659)
chr3 (67-134)||(7443109-7443176)
chr3 (68-118)||(754745-754795)
chr3 (149-255)||(9565828-9565934)
chr3 (204-262)||(43991961-43992019)
chr3 (79-262)||(2635594-2635780)
chr3 (204-262)||(1891056-1891114)
chr3 (204-254)||(2442040-2442090)
chr3 (215-255)||(746382-746422)
chr3 (204-252)||(13498225-13498273)
chr3 (204-255)||(7942486-7942537)
chr3 (204-254)||(2696732-2696782)
chr3 (204-254)||(3754601-3754651)
chr3 (204-254)||(4142134-4142184)
chr3 (204-254)||(4157944-4157994)
chr3 (204-254)||(12133098-12133148)
chr3 (20-58)||(43991765-43991803)
chr3 (205-254)||(2459277-2459326)
chr3 (67-103)||(7427756-7427792)
chr3 (67-103)||(12217891-12217927)
chr3 (204-255)||(771498-771549)
chr3 (204-255)||(2456250-2456301)
chr3 (207-254)||(3746012-3746059)
chr3 (204-255)||(7430535-7430586)
chr3 (18-53)||(44001412-44001447)
chr3 (90-132)||(747260-747302)
chr3 (204-262)||(783791-783849)
chr3 (68-122)||(9565955-9566009)
chr3 (204-262)||(9608336-9608394)
chr3 (204-254)||(37753345-37753395)
chr3 (205-254)||(7398179-7398228)
chr3 (206-255)||(9587184-9587233)
chr3 (72-129)||(44001484-44001541)
chr3 (67-103)||(2456105-2456141)
[»] chr7 (2 HSPs)
chr7 (204-254)||(1078160-1078210)
chr7 (21-55)||(39298798-39298832)
[»] chr5 (11 HSPs)
chr5 (204-254)||(11081814-11081864)
chr5 (204-254)||(23766862-23766912)
chr5 (204-254)||(23816710-23816760)
chr5 (204-252)||(20292996-20293044)
chr5 (204-255)||(2067051-2067102)
chr5 (204-254)||(23769646-23769696)
chr5 (204-254)||(23819494-23819544)
chr5 (204-253)||(3181718-3181767)
chr5 (204-252)||(20301444-20301492)
chr5 (204-252)||(20305857-20305905)
chr5 (204-252)||(20310261-20310309)
[»] chr2 (7 HSPs)
chr2 (159-255)||(33020269-33020365)
chr2 (204-254)||(36577367-36577417)
chr2 (198-254)||(11237688-11237744)
chr2 (159-255)||(33038116-33038212)
chr2 (204-254)||(7156192-7156242)
chr2 (204-254)||(7160754-7160804)
chr2 (213-254)||(6538844-6538885)
[»] chr6 (6 HSPs)
chr6 (198-255)||(24417485-24417542)
chr6 (204-254)||(4183001-4183051)
chr6 (204-254)||(4743845-4743895)
chr6 (207-252)||(9819831-9819876)
chr6 (205-254)||(19119065-19119114)
chr6 (205-254)||(19126359-19126408)
[»] scaffold0044 (1 HSPs)
scaffold0044 (207-255)||(89147-89195)
[»] chr4 (2 HSPs)
chr4 (207-254)||(20016185-20016232)
chr4 (204-254)||(20019772-20019822)
[»] chr1 (3 HSPs)
chr1 (207-254)||(51381455-51381502)
chr1 (204-254)||(51756750-51756800)
chr1 (204-254)||(51858607-51858657)
[»] scaffold1004 (1 HSPs)
scaffold1004 (198-256)||(2138-2196)
[»] scaffold0760 (1 HSPs)
scaffold0760 (198-256)||(4633-4691)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 2491897 - 2492141
Alignment:
Q  18 gagtatttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaacttttcctacc 117  Q
    ||||||| ||||||||||||||||||||||| |||| | || |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2491897 gagtattcgttagtggcactgttaattggttagcatgtgatgattcatgtattctttctcttgatttagagaaggagtcatatcaacaacttttcctacc 2491996  T
Q  118 tgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatg 217  Q
    ||||||||||||||||| | || || ||| |||  ||||  |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  2491997 tgattttgagaatgagaatgattcgttgatcttaagtgtgctgagggattgcttgtgtgtttttgcaactattgataggattttgaatgtttggattatg 2492096  T
Q  218 aaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  2492097 aaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 2492141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 2631222 - 2631408
Alignment:
Q  68 attctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggatt 167  Q
    |||||||||||||||||||| || |||||||||||| | |||| || ||||||||| ||| |||||    || |   ||| ||||||||  |||| ||||    
T  2631222 attctttctcttgatttagaaaatgagtcatatcaagagctttacccacctgatttcgaggatgagtcatattcctggacattgggtgtgctgagtgatt 2631321  T
Q  168 gcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
     ||||||||| |||||| ||| ||||| | |||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  2631322 acttgtgtgtctttgcaactagtgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgt 2631408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 2476452 - 2476686
Alignment:
Q  18 gagtatttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaacttttcctacc 117  Q
    |||||||||| ||||||||| |||||||||||||  || || ||||| | |||||||||||||||||| ||||||||||||||||||  ||||| |||||    
T  2476452 gagtatttgtgagtggcactcttaattggttggcccttgatgattcaaaaattctttctcttgatttaaagaaggagtcatatcaactgcttttgctacc 2476551  T
Q  118 tgattttgagaatgagagtcatac---gatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggatt 214  Q
    |||||      |  || ||||| |   |||   ||||| ||| |||||||||||||||||| | | |||||||| ||||| | || |  |||||||||||    
T  2476552 tgatt------acaagtgtcattcgtggatcttcttggatgtagtgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggatt 2476645  T
Q  215 atgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||  | |||||||||  |||||||||||||||||||||    
T  2476646 atgaaacactatggaaataaagagtcttggactaaattgta 2476686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 7324661 - 7324423
Alignment:
Q  18 gagtatttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaacttttcctacc 117  Q
    |||||||||| | ||||||||||||||||||||||  | || ||||| |||||||||| ||||||||| | ||||||||||||||||| ||||| |||||    
T  7324661 gagtatttgtcaatggcactgttaattggttggcaagtgatgattcaaatattctttcgcttgatttaaacaaggagtcatatcaacatcttttgctacc 7324562  T
Q  118 tgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatg 217  Q
    |||||  || |||||    | || |  || ||||  ||| |||||||||||| |  || | |||| | ||  ||||| |  |||  ||||||||||||||    
T  7324561 tgattccgaaaatga----cttatg--gatcttgcatgtggtgagggattgccttggtctctttggaactggtgatatgtctttggatgtttggattatg 7324468  T
Q  218 aaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    ||||| || ||||||  ||||||||||||||||||||||||||||    
T  7324467 aaggactacggaaataaagagtcttggactaaattgtatagtgtt 7324423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 255
Target Start/End: Complemental strand, 2659379 - 2659151
Alignment:
Q  21 tatttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaacttttcctacctga 120  Q
    |||||||||||||||||||||||||||| |||| | ||   |||    || | ||||||||||||||||||||||| |||||| | |||   ||||||||    
T  2659379 tatttgttagtggcactgttaattggtttgcatatgatg--tca----ttatatctcttgatttagagaaggagtcgtatcaaaagcttcggctacctga 2659286  T
Q  121 ttttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttca-atgtttggattatgaa 219  Q
    ||| || ||||| | | || ||  |  | ||||||| |||||||||||||||||||| ||||||  || |||| | || ||   ||||||||||||||||    
T  2659285 tttcgacaatgaaaataattcgtgggacgtgggtgtggtgagggattgcttgtgtgtctttgcaagtagtgat-gaatattgggatgtttggattatgaa 2659187  T
Q  220 ggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||||||||| |||||||||||||||||||||    
T  2659186 ggagtatggaaatcaagagtcttggactaaattgta 2659151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 7443072 - 7442969
Alignment:
Q  159 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatag 258  Q
    ||||||||||||||||||| | || ||||| ||||  | |||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||    
T  7443072 tgagggattgcttgtgtgtctatgaagctagtgatttgttttttaatgtttggatcatgaaggagtatggaaatcaagagtcttggactaagttgtatag 7442973  T
Q  259 tgtt 262  Q
    ||||    
T  7442972 tgtt 7442969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 254
Target Start/End: Complemental strand, 9594811 - 9594624
Alignment:
Q  67 tattctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggat 166  Q
    |||||||||||||| ||||||| | |||||||||| |||||||||||| ||||||| ||| ||||||    || |   ||  |||| |||  ||||||||    
T  9594811 tattctttctcttgctttagaggatgagtcatatcgacaacttttcctccctgattctgataatgagtcatattcatggaggttggatgtgctgagggat 9594712  T
Q  167 tgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||| |||| | ||| ||||| | |||| |||||||||||||||||  |||| ||||||  ||||||||||||||||||||    
T  9594711 tgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggactaaattgt 9594624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 254
Target Start/End: Complemental strand, 768515 - 768329
Alignment:
Q  68 attctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcata-cgat-gaccttgggtgtcgtgaggga 165  Q
    ||||||||||||||||||||||| || ||||||| | | |||| ||||||||||||| ||||||||  ||||  || | ||  ||||||||  |||||||    
T  768515 attctttctcttgatttagagaatgactcatatcgagagctttacctacctgatttttagaatgag--tcatgtcgctcgaagttgggtgtgttgaggga 768418  T
Q  166 ttgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||| ||||   ||| ||| | | |||| ||||||||||||||||| ||||| ||||||  ||||||||||||||||||||    
T  768417 ttgcttgtgtgtatttgacactagtgaaatgttttttaatgtttggattatgaatgagtacggaaatgaagagtcttggactaaattgt 768329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 2474926 - 2475014
Alignment:
Q  23 tttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaactttt 111  Q
    ||||| ||||||||||| ||||||||| ||  | || |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2474926 tttgtgagtggcactgtaaattggttgccaagtgattattcacgtattctttctcttgatttagagaaggagtcatatcaacaactttt 2475014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 72 - 255
Target Start/End: Complemental strand, 2644544 - 2644361
Alignment:
Q  72 tttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgctt 171  Q
    |||||||| |||||||||| ||||| |||||| |||||| || |||||| || | | |||| | | || ||  |  ||| |||||  |||||||||||||    
T  2644544 tttctcttcatttagagaacgagtcgtatcaaaaactttgcccacctgacttcggggatgaaaataatccgtgggactttggtgtgttgagggattgctt 2644445  T
Q  172 gtgtgtttttgcagctattgataggat-tttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||| |||||| ||| |||| | || |||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2644444 gtgtgtctttgcaactagtgat-gaatatttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgta 2644361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 9562215 - 9561977
Alignment:
Q  18 gagtatttgttagtggcactgttaattggttggcattttatcattcacatattctttctcttgatttagagaaggagtcatatcaacaacttttcctacc 117  Q
    |||||||||| ||||||||||||||||||||||||  | || |||||  |||||| ||||||||| ||||||||||||| ||||||||  |||| |||||    
T  9562215 gagtatttgtgagtggcactgttaattggttggcaagtgatgattcatttattctctctcttgatgtagagaaggagtcgtatcaacaggttttgctacc 9562116  T
Q  118 tgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatg 217  Q
    ||||   ||||||||    | |  |  || |||||||||  | ||| ||||||||||| | || ||  ||| | ||  | ||||  ||||||||||||||    
T  9562115 tgataccgagaatga----ctt--gtggatcttgggtgtgctaaggaattgcttgtgtatcttagctactagtaatttgtttttggatgtttggattatg 9562022  T
Q  218 aaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    || ||||||||||||| |||||||||||||||||| || ||||||    
T  9562021 aatgagtatggaaatcaagagtcttggactaaattatacagtgtt 9561977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 7334425 - 7334238
Alignment:
Q  68 attctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggatt 167  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||||| | |  |  |  ||  |||| | | ||||||||||    
T  7334425 attctttctcttgatttagagaaagagtcatatcagcaacttttcctacctaattatgagaatgaaaatgttcagtggattttggatatggtgagggatt 7334326  T
Q  168 gcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||||| |||||   || |||||    ||   |||||||||| |||||||| || ||||||  |||||||||||||||||||||    
T  7334325 gcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgta 7334238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 255
Target Start/End: Original strand, 2502017 - 2502200
Alignment:
Q  72 tttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtcatacgatgaccttgggtgtcgtgagggattgctt 171  Q
    ||||||||||||||||||||||||||| |||| | |||| || |||||| |||| |||||| | | ||  |  ||  ||||||||  | |||||||||||    
T  2502017 tttctcttgatttagagaaggagtcatgtcaagagctttgcccacctgactttgggaatgaaaataattggtggaatttgggtgtgctcagggattgctt 2502116  T
Q  172 gtgtgtttttgcagctattgataggat-tttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||| ||||||| || |||| | || ||   |||||||||||||||||||||||||||||   |||| |||||||||| ||||    
T  2502117 gtgtgtctttgcaggtagtgat-gaatattgggatgtttggattatgaaggagtatggaaataaggagttttggactaaactgta 2502200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 754659 - 754608
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  754659 atgtttggattatgaaggagtatggagatcaagagtcttggactaaattgta 754608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 134
Target Start/End: Complemental strand, 7443176 - 7443109
Alignment:
Q  67 tattctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgaga 134  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||  ||||| ||||    
T  7443176 tattctttctcttgatttagaaaaggagtcgtatcaaaaacttttcctacctgattccgagaacgaga 7443109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 754795 - 754745
Alignment:
Q  68 attctttctcttgatttagagaaggagtcatatcaacaacttttcctacct 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  754795 attctttctcttgatttagagaaggagtcatatcaacatcttttgctacct 754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 255
Target Start/End: Complemental strand, 9565934 - 9565828
Alignment:
Q  149 ttgggtgtcgtgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggacta 248  Q
    |||||| | ||||||| |||||||||||| ||||||  || ||||| |  | |  |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  9565934 ttgggtttggtgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggacta 9565835  T
Q  249 aattgta 255  Q
    |||||||    
T  9565834 aattgta 9565828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 43991961 - 43992019
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  43991961 atgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgtt 43992019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 262
Target Start/End: Original strand, 2635594 - 2635780
Alignment:
Q  79 tgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaatgagagtca------tacgatgaccttgggtgtcgtgagggattgcttg 172  Q
    |||||||||||||||||| |||| ||||||||  ||||||||||| |||||||||| | |      | ||  || ||||| |||  ||||| ||||| ||    
T  2635594 tgatttagagaaggagtcgtatcgacaactttggctacctgatttcgagaatgagaatgaaaatggtccgtggatcttggatgtgatgaggaattgcatg 2635693  T
Q  173 tgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    ||||| |||||| ||| ||||  | ||||  |||||||||||||   ||||||||||| |  ||||||||||||||||||||| ||||||    
T  2635694 tgtgtctttgcaactagtgatgtgtttttggatgtttggattat---ggagtatggaagtgaagagtcttggactaaattgtacagtgtt 2635780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 1891114 - 1891056
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    |||||||||||||||||||  ||||||||  ||| ||||||||||||||||||||||||    
T  1891114 atgtttggattatgaaggaacatggaaataaagactcttggactaaattgtatagtgtt 1891056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 2442040 - 2442090
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  2442040 atgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 746422 - 746382
Alignment:
Q  215 atgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaattgta 746382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 13498225 - 13498273
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||||    
T  13498225 atgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 7942486 - 7942537
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||||||||||| |||  ||||||||||| |||||||||    
T  7942486 atgtttggattatgaaggagtatggtaataaagagtcttggattaaattgta 7942537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 2696782 - 2696732
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  2696782 atgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 2696732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 3754601 - 3754651
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  3754601 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 4142184 - 4142134
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  4142184 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4142134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 4157994 - 4157944
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  4157994 atgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 12133098 - 12133148
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| |||||| ||||||||||||| ||||||| |||||||||||||    
T  12133098 atgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgt 12133148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 43991765 - 43991803
Alignment:
Q  20 gtatttgttagtggcactgttaattggttggcattttat 58  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  43991765 gtatttgtgagtggcactgttaattggttggcattttat 43991803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 2459277 - 2459326
Alignment:
Q  205 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||||||| |||||||||  |||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggacaaaattgt 2459326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 7427792 - 7427756
Alignment:
Q  67 tattctttctcttgatttagagaaggagtcatatcaa 103  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7427792 tattgtttctcttgatttagagaaggagtcatatcaa 7427756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 12217891 - 12217927
Alignment:
Q  67 tattctttctcttgatttagagaaggagtcatatcaa 103  Q
    |||| ||||||||||||||||||||||||||||||||    
T  12217891 tattgtttctcttgatttagagaaggagtcatatcaa 12217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 771549 - 771498
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||||||    
T  771549 atgtttgggttatgaaggaatatggaaatacagactcttggactaaattgta 771498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 2456250 - 2456301
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||||||    
T  2456250 atgtttgggttatgaaggaatatggaaataaagactcttggactaaattgta 2456301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 3746012 - 3746059
Alignment:
Q  207 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||||| |||| ||| | ||||||||||||||||||||    
T  3746012 tttggattatgaaggaatatgcaaagcaagagtcttggactaaattgt 3746059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 7430586 - 7430535
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||| |||||||||||  | |||||| ||||||||||||    
T  7430586 atgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgta 7430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 44001412 - 44001447
Alignment:
Q  18 gagtatttgttagtggcactgttaattggttggcat 53  Q
    |||||||||| |||||||||||||||||||||||||    
T  44001412 gagtatttgtgagtggcactgttaattggttggcat 44001447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 747302 - 747260
Alignment:
Q  90 aggagtcatatcaacaacttttcctacctgattttgagaatga 132  Q
    |||||||||||||||||||||| |||||||| | |||||||||    
T  747302 aggagtcatatcaacaacttttgctacctgaatctgagaatga 747260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 783849 - 783791
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    ||||||||||||||||||| |||||||||  | || | |||||||||||||||| ||||    
T  783849 atgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgtt 783791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 9566009 - 9565955
Alignment:
Q  68 attctttctcttgatttagagaaggagtcatatcaacaacttttcctacctgatt 122  Q
    |||||||||||||||||||  || |||||||||||||| ||||| |||||| |||    
T  9566009 attctttctcttgatttagtaaaagagtcatatcaacatcttttgctacctaatt 9565955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 9608394 - 9608336
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatagtgtt 262  Q
    |||||||| |||||||||| |||||||||  ||| |||||||||||||| || ||||||    
T  9608394 atgtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtt 9608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 37753395 - 37753345
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||| |||| ||||||||   ||||||||||||||||||||    
T  37753395 atgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Complemental strand, 7398228 - 7398179
Alignment:
Q  205 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||| | ||||||||||||||||||  ||||||||||| ||||||||    
T  7398228 tgtttggttgatgaaggagtatggaaatgaagagtcttggattaaattgt 7398179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 9587233 - 9587184
Alignment:
Q  206 gtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||| |||||||||  |||| ||||||| ||||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgta 9587184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 44001484 - 44001541
Alignment:
Q  72 tttctcttgatttagagaaggagtcatatcaacaacttttcctacctgattttgagaa 129  Q
    ||||||||||| | || ||||||||||||||||| ||||  || ||||||||||||||    
T  44001484 tttctcttgatcttgaaaaggagtcatatcaacagctttcgctgcctgattttgagaa 44001541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 2456105 - 2456141
Alignment:
Q  67 tattctttctcttgatttagagaaggagtcatatcaa 103  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  2456105 tattgtttctcttgatttggagaaggagtcatatcaa 2456141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 1078210 - 1078160
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  1078210 atgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 39298798 - 39298832
Alignment:
Q  21 tatttgttagtggcactgttaattggttggcattt 55  Q
    ||||||| |||||||||||||||||||||||||||    
T  39298798 tatttgtgagtggcactgttaattggttggcattt 39298832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 11081814 - 11081864
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  11081814 atgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgt 11081864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23766912 - 23766862
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||||| || |||||||||  ||||||||||||||||||||    
T  23766912 atgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23816760 - 23816710
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||||||||| || |||||||||  ||||||||||||||||||||    
T  23816760 atgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 20292996 - 20293044
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    ||||||||||||||||||| ||||||| |  ||||||||||||||||||    
T  20292996 atgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 2067102 - 2067051
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||||||||||||||||||||||||||||  || |||||||| |||| ||||    
T  2067102 atgtttggattatgaaggagtatggaaatgtagggtcttggattaaactgta 2067051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23769696 - 23769646
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  23769696 atgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23769646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 23819544 - 23819494
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||||||||| ||||| |||  || |||||||||||||||||    
T  23819544 atgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgt 23819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 3181718 - 3181767
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattg 253  Q
    |||||||| |||||||||| |||||||||  ||||||||||| |||||||    
T  3181718 atgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattg 3181767  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 20301444 - 20301492
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    ||||||||||||||||||| |||| || |  ||||||||||||||||||    
T  20301444 atgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 20305857 - 20305905
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    |||| |||||||||||||| ||||||| |  ||||||||||||||||||    
T  20305857 atgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 20310261 - 20310309
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    |||| |||||||||||||| ||||||| |  ||||||||||||||||||    
T  20310261 atgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 33020269 - 33020365
Alignment:
Q  159 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||  | ||||||  || ||||| | |||| ||||| |||||||||||||| |||||||||  | |||||||||||| ||||||    
T  33020269 tgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaatatggaaataaaaagtcttggactagattgta 33020365  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 36577367 - 36577417
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||||||||| |||||||||  ||||||||||| ||||||||    
T  36577367 atgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 11237688 - 11237744
Alignment:
Q  198 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||| |||||||| ||||| |||||||||||||| ||||  |||||||||||||||    
T  11237688 ttttcgatgtttggcttatggaggagtatggaaatagagaaacttggactaaattgt 11237744  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 33038116 - 33038212
Alignment:
Q  159 tgagggattgcttgtgtgtttttgcagctattgataggattttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||||||||||||||  | ||||||  || ||||| | ||||  ||||||||||||||||||| ||||||||   | |||||||||||| ||||||    
T  33038116 tgagggattgcttgtgcatctttgcaagtagtgatatgttttttgatgtttggattatgaaggaatatggaaacaaaaagtcttggactagattgta 33038212  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 7156242 - 7156192
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| ||||||||||||||||||||  ||| |||||| |||||||||    
T  7156242 atgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgt 7156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 7160804 - 7160754
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| ||||||||||||||||||||   || ||||||||||||||||    
T  7160804 atgtttggcttatgaaggagtatggaaataatgattcttggactaaattgt 7160754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 6538844 - 6538885
Alignment:
Q  213 ttatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||||||||||  ||| ||||||||||||||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgt 6538885  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 255
Target Start/End: Complemental strand, 24417542 - 24417485
Alignment:
Q  198 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    |||| ||||||||||||||||| || |||||||||  ||| |||||||||||||||||    
T  24417542 ttttaaatgtttggattatgaaagaatatggaaataaagaatcttggactaaattgta 24417485  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 4183051 - 4183001
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||    
T  4183051 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgt 4183001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 4743895 - 4743845
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||    
T  4743895 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgt 4743845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  207 tttggattatgaaggagtatggaaatcgagagtcttggactaaatt 252  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 19119065 - 19119114
Alignment:
Q  205 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||| | |||||||| |||||||||  ||||||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgt 19119114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 254
Target Start/End: Original strand, 19126359 - 19126408
Alignment:
Q  205 tgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||| | |||||||| |||||||||  ||||||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaattgt 19126408  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 89147 - 89195
Alignment:
Q  207 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgta 255  Q
    ||||| |||||||||| |||||||||  |||||||||||||||||||||    
T  89147 tttgggttatgaaggaatatggaaataaagagtcttggactaaattgta 89195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 20016232 - 20016185
Alignment:
Q  207 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||| |||||||| ||||||| || ||||||||||||||||||||    
T  20016232 tttggatcatgaaggaatatggaattcaagagtcttggactaaattgt 20016185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 20019822 - 20019772
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||| | |||||||| ||||||| || ||||||||||||||||||||    
T  20019822 atgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgt 20019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 254
Target Start/End: Complemental strand, 51381502 - 51381455
Alignment:
Q  207 tttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    ||||||||||||| || |||||||||  ||||||||||||||||||||    
T  51381502 tttggattatgaaagaatatggaaatgaagagtcttggactaaattgt 51381455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Complemental strand, 51756800 - 51756750
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||| |||||||| ||||||||| || | ||||||||||||||||    
T  51756800 atgtttggatcatgaaggaatatggaaatggacaatcttggactaaattgt 51756750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 51858607 - 51858657
Alignment:
Q  204 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgt 254  Q
    |||||||||| |||||||| |||||||||  ||| ||||||||||||||||    
T  51858607 atgtttggatcatgaaggaatatggaaatgtagaatcttggactaaattgt 51858657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 2138 - 2196
Alignment:
Q  198 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtat 256  Q
    |||| |||||||||  ||||||||| |||||||||  ||||||||||||||||| ||||    
T  2138 ttttgaatgtttgggctatgaaggaatatggaaatgtagagtcttggactaaatcgtat 2196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 256
Target Start/End: Original strand, 4633 - 4691
Alignment:
Q  198 ttttcaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtat 256  Q
    |||| |||||||||  ||||||||| |||||||||  ||||||||||||||||| ||||    
T  4633 ttttgaatgtttgggctatgaaggaatatggaaatgtagagtcttggactaaatcgtat 4691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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