View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_20 (Length: 253)
Name: NF17749_low_20
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_20 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 2492658 - 2492410
Alignment:
| Q |
12 |
agcaaaggcagctttactacaaaacatctaatatgtcccaaatagcttttgcataagcaaaaatcatgtaactaactaccaccatcaacttccttaaatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
2492658 |
agcaaaggcagctttactacaaaacatctaatatgttccaaatagcttttgcataagcaaaaatcatgtaacta----ccaccatcgacttccttaaatc |
2492563 |
T |
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| Q |
112 |
cctaacaaacaccttccatctcattgctaaaacactatttaaaaacataataaaagtcattttcaaccatttagattccattaaccattagattaacaat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2492562 |
cctaacaaacaccttccatctcattgctaaaacactatttaaaaacataataaaagtcattttcaaccatttagattccattaaccattagattaacaat |
2492463 |
T |
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| Q |
212 |
ga-----------aagaaaaatcagagcaggcgtaaaataaataacacacaca |
253 |
Q |
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| T |
2492462 |
gatccaacaagtcaagaaaaatcagagcatgcgtaaaataaataacacacaca |
2492410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 2502940 - 2502797
Alignment:
| Q |
14 |
caaaggcagctttactacaaaa----catctaatatgtcccaaatagcttttgcataagcaaaaatcatgtaactaactaccaccatcaacttccttaaa |
109 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||| || |
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| T |
2502940 |
caaaggcagctttactacaaaaaaaacatctaatatgtcccaaatagcttttgcataatccaaaatcatgtaacta----ccaccatctacttcctttaa |
2502845 |
T |
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| Q |
110 |
tccctaacaaacaccttccatctcattgctaaaacactatttaaaaac |
157 |
Q |
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| T |
2502844 |
tccctaacaaacaccttccatctcattgctaaaacacttattaaaaac |
2502797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 7323634 - 7323774
Alignment:
| Q |
14 |
caaaggcagctttactacaaaacatctaatatgtcccaaata-gcttttgcataagcaaaaatcatgtaactaactaccaccatcaacttccttaaatcc |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| |||||||||| |||||||| ||||| |
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| T |
7323634 |
caaaggcaactttactacaaaacatctaatatgtcccaaataagctttttcataagccaaaatcatgtaac----taccaccatctacttcctttaatcc |
7323729 |
T |
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| Q |
113 |
ctaacaaacaccttccatctcattgctaaaacactatttaaaaac |
157 |
Q |
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||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
7323730 |
ctaacaaacaccttctatctcattgctaaaacacttattaaaaac |
7323774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 7442283 - 7442408
Alignment:
| Q |
17 |
aggcagctttactacaaaacatctaatatgtcccaaat-agcttttgcataagcaaaaatcatgtaactaactaccaccatcaacttccttaaatcccta |
115 |
Q |
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||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||| |||||||||| |||||| ||| |||||||| | ||||| |
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| T |
7442283 |
aggcagcttcactgcaaaacatctaatatgtcccaaataagctttttcataagccaaaatcatgt------ttaccactatctacttcctttagtccctg |
7442376 |
T |
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| Q |
116 |
acaaacaccttccatctcattgctaaaacact |
147 |
Q |
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|| || |||||||||||||||||||||||||| |
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| T |
7442377 |
acgaataccttccatctcattgctaaaacact |
7442408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 7324068 - 7324121
Alignment:
| Q |
160 |
aataaaagtcattttcaaccatttagattccattaaccattagattaacaatga |
213 |
Q |
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|||||||||||||||||||| | |||||||||| |||||||||||||||||||| |
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| T |
7324068 |
aataaaagtcattttcaaccctatagattccatcaaccattagattaacaatga |
7324121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Original strand, 7318156 - 7318197
Alignment:
| Q |
14 |
caaaggcagctttactacaaaacatctaatatgtcccaaata |
55 |
Q |
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| T |
7318156 |
caaaggcagcttaactacaaaacatctaatatgtcccaaata |
7318197 |
T |
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