View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_21 (Length: 217)
Name: NF17749_low_21
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 2481534 - 2481740
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaatnnnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggta |
100 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
2481534 |
agatatgcttatcaacaagggttctcaattaaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggta |
2481633 |
T |
|
| Q |
101 |
gagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtg |
200 |
Q |
| |
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||| ||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |
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| T |
2481634 |
aagcatccttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatc |
2481733 |
T |
|
| Q |
201 |
tcatgat |
207 |
Q |
| |
|
||||||| |
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|
| T |
2481734 |
tcatgat |
2481740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12632583 - 12632377
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaatnnnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
12632583 |
agatatgcttatcaacaagggttctcaattaaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggta |
12632484 |
T |
|
| Q |
101 |
gagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtg |
200 |
Q |
| |
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||| ||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |
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|
| T |
12632483 |
aagcatccttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatc |
12632384 |
T |
|
| Q |
201 |
tcatgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
12632383 |
tcatgat |
12632377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 27108290 - 27108084
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaatnnnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
27108290 |
agatatgcttatcaacaagggttctcaattaaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggta |
27108191 |
T |
|
| Q |
101 |
gagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtg |
200 |
Q |
| |
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||| ||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |
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|
| T |
27108190 |
aagcatccttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatc |
27108091 |
T |
|
| Q |
201 |
tcatgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
27108090 |
tcatgat |
27108084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 44680903 - 44680697
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaatnnnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| |
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| T |
44680903 |
agatatgcttatcaacaagggttctcaattaaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggta |
44680804 |
T |
|
| Q |
101 |
gagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtg |
200 |
Q |
| |
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||| ||||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | |
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|
| T |
44680803 |
aagcatccttgaaaataatggaaccatcaaaagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatc |
44680704 |
T |
|
| Q |
201 |
tcatgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
44680703 |
tcatgat |
44680697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 23272145 - 23271939
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaatnnnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||| |||| ||||| ||||||||||||||| |
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|
| T |
23272145 |
agatatgcttatcaacaagggttctcaattaaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggta |
23272046 |
T |
|
| Q |
101 |
gagcctccttgaaattcatggaaccatcaaaagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtg |
200 |
Q |
| |
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||| ||||||| | | |||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||| ||||||||||| | |
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| T |
23272045 |
aagcatccttgacaataatggaaccatcaaaagagcagagaaatagacaattgtcaaagtgtaaatgcaaagctcatttacgaatcaaattacaaaaatc |
23271946 |
T |
|
| Q |
201 |
tcatgat |
207 |
Q |
| |
|
||||||| |
|
|
| T |
23271945 |
tcatgat |
23271939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4708845 - 4708873
Alignment:
| Q |
1 |
agatatgcttatcaacaagggttctcaat |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
4708845 |
agatatgcttatcaacaagggttctcaat |
4708873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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