View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_3 (Length: 414)
Name: NF17749_low_3
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 46261521 - 46261107
Alignment:
| Q |
1 |
tgatggtgtctatttctaccatgacgatgtcgatgtcattattgatcacgatatttaataatgaatatttcttcaattttaggtaattatcatattcttc |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46261521 |
tgatggtgtctatttctaccatgacgatgttggtgtcattattgatcatgatatttaataatgaatatttcttcaattttaagtaattatcatattcttc |
46261422 |
T |
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| Q |
101 |
atcaccccactttagaaagtcaatcggtgcaactatattttcgtacttgtctatctctaaagaggttggtaaatgaagggtatccttgcctgattgttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46261421 |
atcaccccactttagaaagtcaatcggtgcaactatattttcgtacttgtctatctctaaagaggttggtaaatgaagggtatccttgcctgattgttct |
46261322 |
T |
|
| Q |
201 |
agctcatgaacgtctaactat-ggggtattagagataccctcaataggtgatgtctggtttataaagggccatgtcttcttcagcggttggatcaccaat |
299 |
Q |
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| T |
46261321 |
agctcatgaacgtctaactatgggggtattagagataccctcaataggtgatgtctggtttataaagggccatgtcttcttcagcggttggatcaccaat |
46261222 |
T |
|
| Q |
300 |
cttagtatgatgaaatgccatgttgagagcttccaataccttggaagatgatatttcttttgtgtggtacctttactattatatgtagagtttgtgtcag |
399 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
46261221 |
cttagtatgatgaaatgtcatgttgagagcttccaataccttggaagatgatatttcttttgtgtggtacctttactattagatgtagagtttgtgtcat |
46261122 |
T |
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| Q |
400 |
cttttttaagaatct |
414 |
Q |
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| T |
46261121 |
cttttgtaagaatct |
46261107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 46026136 - 46026551
Alignment:
| Q |
1 |
tgatggtgtctatttctaccatgacgatgtcgatgtcattattgatcacgatatttaataatgaatatttcttcaattttaggtaattatcatattcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46026136 |
tgatggtgtctatttctaccatgacgatgtcggtgtcattattgatcatgatatttaataatgaatatttcttcaattttaggtaattatcatattcttc |
46026235 |
T |
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| Q |
101 |
atcaccccactttagaaagtcaatcggtgcaactatattttcgtacttgtctatctctaaagaggttggtaaatgaagggtatccttgcctgattgttct |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46026236 |
atcaccccactttagaaagtcaatcggtgtaactatattttcgtacttgtctatctctaaagaagttggtaaatgaagggtatccttgcctgattgttct |
46026335 |
T |
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| Q |
201 |
agctcatgaacgtctaactatggg-gtattagagataccctcaataggtgatgtctggtttataaagggccatgtcttcttcagcggttggatcaccaat |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46026336 |
agctcatgaacgtctaactatgggtgtattagagataccctcaataggtgatgtctggtttataaagggccatgtcttcttcagcggttggatcaccaat |
46026435 |
T |
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| Q |
300 |
cttagtatgatgaaatgccatgttgagagcttccaataccttggaagatgatatttcttttgtgtggtacctttactattatatgt-agagtttgtgtca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
46026436 |
cttagtatgatgaaatgccatgttgagagcttccaataccttggaagatgatatttcttttgtgtggtacctttactattagatgtaagagtttgtgtca |
46026535 |
T |
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| Q |
399 |
gcttttttaagaatct |
414 |
Q |
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| T |
46026536 |
tcttttgtaagaatct |
46026551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 209
Target Start/End: Complemental strand, 46305288 - 46305147
Alignment:
| Q |
69 |
ttcttcaattttaggtaattatcatattcttcatcaccccactttagaaa-gtcaatcggtgcaactatattttcgtacttgtctatctctaaagaggtt |
167 |
Q |
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|||||| ||||| | |||| ||||||||||| |||| |||||| || ||| ||||| || |||||||||||||| |||| ||||||||||| | |||| |
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| T |
46305288 |
ttcttctattttggataatcatcatattctttatcatcccactctataaaagtcaaacgatgcaactatatttttgtacctgtctatctctggataggtc |
46305189 |
T |
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| Q |
168 |
ggtaaatgaagggtatccttgcctgattgttctagctcatga |
209 |
Q |
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|||||||||||| ||||| ||||| |||||| ||||||| |
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| T |
46305188 |
tgtaaatgaagggcatcctcgcctgcaggttctatctcatga |
46305147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 409
Target Start/End: Complemental strand, 46305069 - 46304972
Alignment:
| Q |
312 |
aaatgccatgttgagagcttccaataccttggaagatgatatttcttttgtgtggtacctttactattatatgtagagtttgtgtcagcttttttaag |
409 |
Q |
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||||||||||| ||||||||||||||||||| |||||| |||||||| | || ||||||| |||||| | |||||||||| ||| ||||| |||| |
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| T |
46305069 |
aaatgccatgtcgagagcttccaataccttgacagatgaaatttctttcgagttgtaccttgactattgactatagagtttgtttcatcttttgtaag |
46304972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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