View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_4 (Length: 404)
Name: NF17749_low_4
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 40667353 - 40666973
Alignment:
| Q |
17 |
acttgatatccttatattttattttgcagcagagtacaagccataataatatgatctcnnnnnnnnnngaatata----cctcacttgagtagcagccat |
112 |
Q |
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| T |
40667353 |
acttgatatccttatactttattttgcagcagagtacaagcaataataatatgatctcaaaaaaaaaaatatatatatacctcacttgagtagcagccat |
40667254 |
T |
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| Q |
113 |
ggttaaagcataataacataacaatgcatgagtttatagtaactggaaacaaacctgagtggcaatggagtcaagctcatcaaaaaaggggacacatgga |
212 |
Q |
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| T |
40667253 |
ggttaaagcataataacatagcaatgcatgagtttatagtaactagaaacaaacctgagtggcaatggagtcaagctcatcaaaaaagaggacacatgga |
40667154 |
T |
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| Q |
213 |
gctgattgtctagccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttag |
312 |
Q |
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| T |
40667153 |
gctgattgtctagccttgtcaaaaatttccctaacattggcatcactttcaccaaaccacattgtaagcaactctgggccttttatactgatgaagttag |
40667054 |
T |
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| Q |
313 |
cttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
393 |
Q |
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| T |
40667053 |
cttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactcctttggatg |
40666973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 109 - 393
Target Start/End: Original strand, 40722747 - 40723032
Alignment:
| Q |
109 |
ccatggttaaagcataataacataacaatgcatgagtttatagtaactggaaa-caaacctgagtggcaatggagtcaagctcatcaaaaaaggggacac |
207 |
Q |
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| T |
40722747 |
ccatcgttaaagcataataacatagcaatccaggagtttatagtaactagaaaaccaacctgagtggcaatggaatcaagctcatcaaaaaagaggacac |
40722846 |
T |
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| Q |
208 |
atggagctgattgtctagccttgtcaaatatttccctaacattggcctcactttcaccaaaccacattgtaagcaattctgggcctttgatactgatgaa |
307 |
Q |
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| T |
40722847 |
atggagctgattgtctagccttgtcaaaaatttccctaacattggcttcactttcaccaaaccacattgtaagtaattctaggccttttatactgatgaa |
40722946 |
T |
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| Q |
308 |
gttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
393 |
Q |
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| T |
40722947 |
gttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccggaggaccatagaagagaactccttttgatg |
40723032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 161 - 391
Target Start/End: Complemental strand, 27978528 - 27978298
Alignment:
| Q |
161 |
acaaacctgagtggcaatggagtcaagctcatcaaaaaaggggacacatggagctgattgtctagccttgtcaaatatttccctaacattggcctcactt |
260 |
Q |
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|||||||||||| ||||| || ||||| |||||||| || ||||||||||||| || | ||| |||||||| |||||||| ||||| ||||||||| |
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| T |
27978528 |
acaaacctgagttgcaatagaatcaagttcatcaaagaaaaggacacatggagcagaaccacgagctttgtcaaaaatttccctcacattagcctcactt |
27978429 |
T |
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| Q |
261 |
tcaccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatc |
360 |
Q |
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| T |
27978428 |
tctccaaaccacattgtgagcagctcgggacctttgatactaatgaagtttgcttgacattcattggcaatagctttggccaaaagggttttaccacaac |
27978329 |
T |
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| Q |
361 |
ccggaggaccatagaagagaactccttttga |
391 |
Q |
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| T |
27978328 |
caggaggaccatagaacagaactccctttga |
27978298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 164 - 385
Target Start/End: Original strand, 41091809 - 41092030
Alignment:
| Q |
164 |
aacctgagtggcaatggagtcaagctcatcaaaaaaggggacacatggagctgattgtctagccttgtcaaatatttccctaacattggcctcactttca |
263 |
Q |
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||||||||| |||||||||||||| |||||||| || ||||||||||||| || | ||||||||||| |||||||| || || ||||||||||| |
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| T |
41091809 |
aacctgagttgcaatggagtcaagttcatcaaagaataggacacatggagcagaaccacgggccttgtcaaaaatttccctcacgtttgcctcactttct |
41091908 |
T |
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| Q |
264 |
ccaaaccacattgtaagcaattctgggcctttgatactgatgaagttagcttgacattcattagcaattgctttggctaacaaagtttttccacatcccg |
363 |
Q |
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| T |
41091909 |
ccaaaccacattgtgagtagctcgggacctttgatactgataaagtttgcctggcattcattggcaatagcttttgccaatagtgttttaccacatccag |
41092008 |
T |
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| Q |
364 |
gaggaccatagaagagaactcc |
385 |
Q |
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||||||||||||| |||||||| |
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| T |
41092009 |
gaggaccatagaaaagaactcc |
41092030 |
T |
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