View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_5 (Length: 398)
Name: NF17749_low_5
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 65 - 385
Target Start/End: Original strand, 6236142 - 6236461
Alignment:
| Q |
65 |
tttatatcttgggtgtagaatgggtgtttgtgtctacgtagattattttcctaatcaatgtcactatgttttttgatttataagaacgaaatgaagaaga |
164 |
Q |
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| T |
6236142 |
tttatatcttgggtgtagaatgggtgtttgtgtctacgtagattattttcctaatcaatgtcactatgttttttgatttataagaacgaaatgaacaaga |
6236241 |
T |
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| Q |
165 |
aataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcaccggtcaaggcaat |
264 |
Q |
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| T |
6236242 |
aataacacaaaaggtaaacacatccatatctacagggctcactgcatatagtagtagtactagttctttgacatgatgtttgttcactggtcaaggcaat |
6236341 |
T |
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| Q |
265 |
aatatcatggtgtttctaaattatagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaatt |
364 |
Q |
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| T |
6236342 |
-atatcatggtgtttctaaattttagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagttaatagaaatt |
6236440 |
T |
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| Q |
365 |
gaaaacctaggtgataggtga |
385 |
Q |
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| T |
6236441 |
gaaaacctaggtgataggtga |
6236461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 6240344 - 6240435
Alignment:
| Q |
105 |
gattattttcctaatcaatgtcactatgttttttgatttata-agaacgaaatgaagaagaaataacacaaaaggtaaacacatccatatct |
195 |
Q |
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| T |
6240344 |
gattattttcctaatcaacatcactatgttttttgatttatatacaaacaaatgaacatgaaataacacaaaaggtaaacacatccatatct |
6240435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 6236094 - 6236124
Alignment:
| Q |
21 |
atgtatcacaattatcatatcactttctcta |
51 |
Q |
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| T |
6236094 |
atgtatcacaattatcatatcactttctcta |
6236124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 33891908 - 33891841
Alignment:
| Q |
288 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagtta |
355 |
Q |
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| T |
33891908 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta |
33891841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Original strand, 33952340 - 33952407
Alignment:
| Q |
288 |
tagtgttcccacattcaacaaaagtagaagaagtctacgaaaccatatttcccctttcgctttagtta |
355 |
Q |
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| T |
33952340 |
tagtgtccccacattcaacaaaagtaaaagaagtcctagaaaccatatttcccttttcactttagtta |
33952407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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