View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17749_low_6 (Length: 390)

Name: NF17749_low_6
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17749_low_6
NF17749_low_6
[»] chr1 (5 HSPs)
chr1 (74-370)||(46269494-46269784)
chr1 (74-382)||(48241628-48241936)
chr1 (1-51)||(5982398-5982448)
chr1 (141-317)||(14206720-14206896)
chr1 (171-215)||(45814546-45814590)
[»] chr7 (2 HSPs)
chr7 (213-382)||(1717823-1717992)
chr7 (172-324)||(6800215-6800367)
[»] chr4 (4 HSPs)
chr4 (222-349)||(53481157-53481284)
chr4 (116-197)||(53481284-53481365)
chr4 (172-249)||(12377475-12377552)
chr4 (150-329)||(48489673-48489852)
[»] scaffold0693 (2 HSPs)
scaffold0693 (116-197)||(58-139)
scaffold0693 (222-279)||(1-58)
[»] chr3 (4 HSPs)
chr3 (75-190)||(47746868-47746983)
chr3 (257-359)||(47746727-47746829)
chr3 (176-229)||(8753882-8753935)
chr3 (89-249)||(3160176-3160336)
[»] chr8 (3 HSPs)
chr8 (172-233)||(42452476-42452537)
chr8 (279-328)||(38246471-38246520)
chr8 (166-230)||(15863838-15863902)
[»] chr2 (3 HSPs)
chr2 (157-379)||(40366377-40366599)
chr2 (172-324)||(40368891-40369043)
chr2 (279-325)||(34116101-34116147)
[»] chr6 (1 HSPs)
chr6 (257-325)||(19249147-19249215)


Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 74 - 370
Target Start/End: Complemental strand, 46269784 - 46269494
Alignment:
Q  74 accgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagg 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||| ||||||||| |||    
T  46269784 accgttacggatgaggtttcctcgtcttttttctttgacgttggaaaaggagagtacgacgagggatatggagaggcgtggttgggagtttgatggtagg 46269685  T
Q  174 gcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatg 273  Q
    || |||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||       |||||||||||||| ||    
T  46269684 gcatgggtgtggagacgtcaattatttgcgtgggaggatgattctttgagggagtgttctctgttattatctaacatctttttgcaggaaactgttcgtg 46269585  T
Q  274 acaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctag 370  Q
    |||||      |||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||    
T  46269584 acaaa------tggctgttagatcccattcatggttactcggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctag 46269494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 74 - 382
Target Start/End: Original strand, 48241628 - 48241936
Alignment:
Q  74 accgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagg 173  Q
    ||||||||||| ||||||||||||||||||   ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48241628 accgttacggaggaggtttcctcgtcttttcaatttgacgatggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggaagg 48241727  T
Q  174 gcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatg 273  Q
    || ||||  ||||||||||| || |||| ||||||||||||||||||||  ||||||||| ||||||||  |||||       |||||||| || |||||    
T  48241728 gcatggggatggagacgtcgtttgtttgcgtgggaggaggattctttgaaagagtgttctttgttattagctaacattattttgcaggaaattgctcatg 48241827  T
Q  274 acaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgt 373  Q
    ||||||||| ||||||||||||||||||||||||||| || |||| | ||| |||||| ||||||| ||||||||| ||| ||||||||| ||||  |||    
T  48241828 acaaatggcagtggctgttagatcccattcatggttattcagtgaagagagtctacacttttttgacaagcaatggcgctttggtgaacatgtcttatgt 48241927  T
Q  374 tgatgatgt 382  Q
    |||||||||    
T  48241928 tgatgatgt 48241936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5982448 - 5982398
Alignment:
Q  1 taaacaataaaaaatatatttgtaatccttgcaaatatatcacctgttact 51  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  5982448 taaacaataaaaaatatatttttaatccttgcaaatatatcaccttttact 5982398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 317
Target Start/End: Original strand, 14206720 - 14206896
Alignment:
Q  141 atggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttat 240  Q
    |||||| | |||||||||||  || ||||  |||| || | ||||||||  || || |||| ||||||| |||| ||| ||||||| |||||||||||||    
T  14206720 atggagggtcgtggttggggaattaatggaggggcatgagagtggagactccgtttgtttgcgtgggagtaggagtctgtgagggaatgttctctgttat 14206819  T
Q  241 tatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtg 317  Q
    ||  |||||       |||||| | ||| || |||| |||||||||| ||||||| || |||||||| ||| |||||    
T  14206820 tacgtaacattgttttgcaggataatgtccaagacacatggcggtggatgttagaccctattcatgggtacacggtg 14206896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 45814590 - 45814546
Alignment:
Q  171 agggcgtgggtgtggagacgtcgattatttgtgtgggaggaggat 215  Q
    |||||||||||||||||||| || || |||| |||||||||||||    
T  45814590 agggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggat 45814546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 213 - 382
Target Start/End: Original strand, 1717823 - 1717992
Alignment:
Q  213 gattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 312  Q
    ||||||||||||||||||||||||||||||| |||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717823 gattctttgagggagtgttctctgttattatctaacatctttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttact 1717922  T
Q  313 cggtgaggggagcctacacctttttgataagcaatggtgctatggtgaacaggtctagtgttgatgatgt 382  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  1717923 cggtgaggggagtctacacctttttgtcaagcaatggcgctatggtgaacaggtctagtgttgatgatgt 1717992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 324
Target Start/End: Original strand, 6800215 - 6800367
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 271  Q
    ||||||||||||||||||| || || |||| |||||||||||| | | |||||||| ||||| || ||||| ||||||       ||||||  ||||||     
T  6800215 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatatgtgagggagcgttctttgctattacataacattgttttgcaggattctgttcg 6800314  T
Q  272 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 324  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  6800315 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 6800367  T

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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 222 - 349
Target Start/End: Complemental strand, 53481284 - 53481157
Alignment:
Q  222 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggg 321  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  53481284 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaagg 53481185  T
Q  322 gagcctacacctttttgataagcaatgg 349  Q
    |||||| ||||||||||| |||||||||    
T  53481184 gagcctgcacctttttgacaagcaatgg 53481157  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 53481365 - 53481284
Alignment:
Q  116 ggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  53481365 ggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 53481284  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 12377552 - 12377475
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    ||||||||||||||||||| || || |||| |||||||||||| ||| |||||||||||||| || ||||| ||||||    
T  12377552 gggcgtgggtgtggagacgccgtttgtttgcgtgggaggaggaatctgtgagggagtgttctttgctattacataaca 12377475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 150 - 329
Target Start/End: Complemental strand, 48489852 - 48489673
Alignment:
Q  150 cgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    |||||||||||  | |||||  |||||| || ||||||||||||||| |||| |||| ||||||| | | ||||| | ||||||||||| ||  ||||||    
T  48489852 cgtggttggggaatcgatggaggggcgtaggagtggagacgtcgattgtttgcgtggaaggaggagtttgtgaggaaatgttctctgttgttgcataaca 48489753  T
Q  250 nnnnnnngcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctac 329  Q
           |||||| ||| |||||||||  ||||||||| ||||||| || |  ||||||||| ||||| | |||||||||    
T  48489752 ttgttttgcaggatactattcatgacacttggcggtggatgttagacccaacccatggttacacggtgcgaggagcctac 48489673  T

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Target: scaffold0693 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 139 - 58
Alignment:
Q  116 ggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggagacgtcgatta 197  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||    
T  139 ggaaaaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggtggggcatgggtgtggagacgtcaatta 58  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 58 - 1
Alignment:
Q  222 agggagtgttctctgttattatataacannnnnnngcaggaaactgttcatgacaaat 279  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  58 agggagtgttctctgttattatataacatttttttgcaggaaactgttcatgacaaat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 190
Target Start/End: Complemental strand, 47746983 - 47746868
Alignment:
Q  75 ccgttacggatgaggtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcaggg 174  Q
    ||||| ||||||| |||||||||  | |||  |||  |||||||| |||||||||||||||||||||||||||| ||||| |||||||| ||||| ||||    
T  47746983 ccgttgcggatgaagtttcctcgcttctttgattttgcgttggaaaaggagagtacggtgagggatatggagagtcgtgggtgggggttcgatggtaggg 47746884  T
Q  175 cgtgggtgtggagacg 190  Q
    ||||||||||||||||    
T  47746883 cgtgggtgtggagacg 47746868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 359
Target Start/End: Complemental strand, 47746829 - 47746727
Alignment:
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 356  Q
    |||||| |||||||| | ||||||||||||| || || ||||||||||||| |||||| ||| |||||| || |||||| ||| ||||| ||| ||| ||    
T  47746829 gcaggacactgttcaagtcaaatggcggtggttgctaaatcccattcatggctactcgttgaagggagcttatacctttctgacaagcactggcgctttg 47746730  T
Q  357 gtg 359  Q
    |||    
T  47746729 gtg 47746727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 8753935 - 8753882
Alignment:
Q  176 gtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtg 229  Q
    ||||||||||||||||||| | || || ||||||||||||  ||||||||||||    
T  8753935 gtgggtgtggagacgtcgactgttagtctgggaggaggatagtttgagggagtg 8753882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 3160336 - 3160176
Alignment:
Q  89 gtttcctcgtcttttttctttgacgttggaacaggagagtacggtgagggatatggagaggcgtggttgggggtttgatggcagggcgtgggtgtggaga 188  Q
    ||||||||||||||||  |||| || ||||  ||||  |||||||| | |  |||||| |  ||||||||||  | |||||  ||| ||||| |||||||    
T  3160336 gtttcctcgtctttttgatttggcggtggataaggattgtacggtgggagggatggagggttgtggttggggaatcgatggaggggtgtgggagtggaga 3160237  T
Q  189 cgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataaca 249  Q
    || ||||| |||| ||||||||| |||||  | || || ||||||||||| ||| ||||||    
T  3160236 cgacgattgtttgcgtgggaggaagattcagtaagagaatgttctctgttgttacataaca 3160176  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 42452476 - 42452537
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttct 233  Q
    ||||||||||||||||||||||  |||||| |||||||||||| ||| ||||||||||||||    
T  42452476 gggcgtgggtgtggagacgtcgtctatttgcgtgggaggaggaatctgtgagggagtgttct 42452537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 328
Target Start/End: Complemental strand, 38246520 - 38246471
Alignment:
Q  279 tggcggtggctgttagatcccattcatggttactcggtgaggggagccta 328  Q
    |||||||||||||||||||| |||||||| || |||||| ||||| ||||    
T  38246520 tggcggtggctgttagatcctattcatggctattcggtgcggggatccta 38246471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 15863838 - 15863902
Alignment:
Q  166 atggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgt 230  Q
    |||||||||||||||||||||||||||| || ||||| | | |||||||   | |||||||||||    
T  15863838 atggcagggcgtgggtgtggagacgtcgtttgtttgtttcgaaggaggagagtgtgagggagtgt 15863902  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 379
Target Start/End: Complemental strand, 40366599 - 40366377
Alignment:
Q  157 gggggtttgatggcagggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnn 256  Q
    ||||| |||||||  ||||||||| |||||||||| |  | ||||  |||||| |||| | | ||||||| |||||  ||||| || ||||||           
T  40366599 ggggggttgatggaggggcgtgggagtggagacgtgggctgtttgcctgggagaaggagtgtgtgagggaatgttccttgttactacataacattatttt 40366500  T
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagcctacacctttttgataagcaatggtgctatg 356  Q
    |||||| |||||||  || |  ||||||||| || |||||||||||||||||||| |||||| |||||| |   |||||||||  |||| ||| | ||||    
T  40366499 gcaggatactgttccagatacttggcggtggttgctagatcccattcatggttacacggtgaagggagcatcttcctttttgactagcactggcgatatg 40366400  T
Q  357 gtgaacaggtctagtgttgatga 379  Q
    ||| ||||||| | |||||||||    
T  40366399 gtggacaggtccaatgttgatga 40366377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 324
Target Start/End: Complemental strand, 40369043 - 40368891
Alignment:
Q  172 gggcgtgggtgtggagacgtcgattatttgtgtgggaggaggattctttgagggagtgttctctgttattatataacannnnnnngcaggaaactgttca 271  Q
    |||| ||||| |||||||||||  | |||| |||||||||||| ||| ||||||||||| || || ||||| ||||||       ||||||  |||||||    
T  40369043 gggcatgggtatggagacgtcgtctgtttgcgtgggaggaggaatctgtgagggagtgtcctttgctattacataacattgttttgcaggattctgttca 40368944  T
Q  272 tgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggag 324  Q
    ||| |  |||| |||| ||||||| ||| ||||||| ||| |||| |||||||    
T  40368943 tgatacttggcagtggttgttagaccccgttcatgggtacacggttaggggag 40368891  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 34116101 - 34116147
Alignment:
Q  279 tggcggtggctgttagatcccattcatggttactcggtgaggggagc 325  Q
    ||||| ||| |||||||||| ||||| ||||||||||||||||||||    
T  34116101 tggcgttggttgttagatcctattcagggttactcggtgaggggagc 34116147  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 19249215 - 19249147
Alignment:
Q  257 gcaggaaactgttcatgacaaatggcggtggctgttagatcccattcatggttactcggtgaggggagc 325  Q
    |||||||| |||||||||    ||||| |||||||||||||| ||||| |||||| |||||||||||||    
T  19249215 gcaggaaaatgttcatgatgcttggcgttggctgttagatcctattcagggttacacggtgaggggagc 19249147  T

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