View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17749_low_9 (Length: 373)
Name: NF17749_low_9
Description: NF17749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17749_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 21550531 - 21550197
Alignment:
| Q |
18 |
tgtaaaccagagagaaa-tttctcctaactgactctaacgacttaacagaatgagtcacacactaccctcgcacctaatgccactactctccctcatttc |
116 |
Q |
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||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21550531 |
tgtaaaccagagaaaaaatttctcctaactgactctaacgacttaacagaatgagtcacacattaccctcgcacctaatgccactactctccctcatttc |
21550432 |
T |
|
| Q |
117 |
ccagcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21550431 |
ccagcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatt |
21550332 |
T |
|
| Q |
217 |
taccaccagcaagagtattttcaactagtgccatggacgattgcagtggcggannnnnnnnnnnnnnnnacaaccgtgtggccaatttgtgaaggatagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21550331 |
taccaccagcaagagtattttcaactagtgccatggacgattgcagtggcgga------ttttttttttacaaccgtgtggccaatttgtgaaggatagt |
21550238 |
T |
|
| Q |
317 |
ggcaccagggcagattttttgttaacctccatatgtgattg |
357 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
21550237 |
ggcaccagggcagattttttgttatcctccatatgtgattg |
21550197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 20362813 - 20362489
Alignment:
| Q |
20 |
taaaccagagagaaatttctcctaactgactctaacgacttaacagaatgagtcacacactaccctcgcacctaatgccactactctccctcatttccca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||| |
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| T |
20362813 |
taaaccagagagaaatttctcctaactgactctaacgacttaacagaatgagtcacacattacccttgcacctaatgccactactctccttcatttccca |
20362714 |
T |
|
| Q |
120 |
gcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatttac |
219 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20362713 |
gcttaacagtgccccttgaaacgtttactatgataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatttac |
20362614 |
T |
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| Q |
220 |
caccagc-aagagtattttcaactagtgccatggacgattgcagtggcgga-nnnnnnnnnnnnnnnnacaaccgtgtggccaatttgtgaaggatagtg |
317 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |
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| T |
20362613 |
caccagctaggagtattttcaactagtgccatggacgattgcagtggcagatttatttttatttttttacagccgtgtggccaatttgtgaaggatagtg |
20362514 |
T |
|
| Q |
318 |
gcaccagggcagattttttgttaac |
342 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
20362513 |
gcacaagggcagattttttgttaac |
20362489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 32195008 - 32194687
Alignment:
| Q |
20 |
taaaccagagagaaatttctcctaactgactctaacgac---ttaacagaatgagtcacacactaccctcgcacctaatgccactactctccctcatttc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| |||||||||||||||||||||||| ||||| | |
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| T |
32195008 |
taaaccagagagaaatttctcctaactgactctaacgacgacttaacagaatgagtgacacattaccgtcgcacctaatgccactactctccttcattcc |
32194909 |
T |
|
| Q |
117 |
ccagcttaacagtgccccttgaaacgtttactaagataaacattccaaaaatggggtctatttcctcatggtccctaacaaaaacacaatttccctaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
32194908 |
ccagcttaacagtgccccttgaaacgtttactatgataaacattccaaaaatggggtctatttcctcatg--------------------ttccctaatt |
32194829 |
T |
|
| Q |
217 |
taccaccagcaag-----agtattttcaactagtgccatggacgattgcagtggcggannnnnnnnnnnnnnnnacaaccgtgt-ggccaatttgtgaag |
310 |
Q |
| |
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|||||||||| || |||||||| ||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||| |
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| T |
32194828 |
taccaccagctagctaggagtatttttaactagtgccatggacgattgcagtggaaga-----tttatttttttacagccgtgtgggccaatttgtgaag |
32194734 |
T |
|
| Q |
311 |
gatagtggcaccagggcagattttttgttaacctccatatgtgattg |
357 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32194733 |
gatagtggcaccagggaagattttttgttaacctccatatgtgattg |
32194687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 24364314 - 24364262
Alignment:
| Q |
20 |
taaaccagagagaaatttctcctaactgactctaacgacttaacagaatgagt |
72 |
Q |
| |
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||||||||| |||||| |||||||||||||||||| ||| || ||||||||| |
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| T |
24364314 |
taaaccagaaagaaatccctcctaactgactctaacaactcaaaagaatgagt |
24364262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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