View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1774_high_2 (Length: 445)

Name: NF1774_high_2
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1774_high_2
NF1774_high_2
[»] chr2 (2 HSPs)
chr2 (16-434)||(5436271-5436697)
chr2 (75-123)||(554735-554783)
[»] chr4 (5 HSPs)
chr4 (79-174)||(11970697-11970792)
chr4 (82-174)||(11981399-11981490)
chr4 (108-155)||(53775130-53775177)
chr4 (103-165)||(10475512-10475574)
chr4 (74-151)||(10482451-10482528)
[»] chr7 (13 HSPs)
chr7 (75-174)||(20405647-20405746)
chr7 (75-174)||(20410927-20411026)
chr7 (77-173)||(22063900-22063996)
chr7 (78-147)||(6864558-6864627)
chr7 (76-173)||(22081119-22081216)
chr7 (77-173)||(22100751-22100847)
chr7 (75-173)||(22070361-22070459)
chr7 (79-156)||(19597388-19597465)
chr7 (75-160)||(22064352-22064437)
chr7 (77-141)||(20374260-20374324)
chr7 (75-118)||(20453066-20453109)
chr7 (77-135)||(20352344-20352402)
chr7 (79-123)||(22021646-22021690)
[»] chr6 (1 HSPs)
chr6 (75-158)||(20770900-20770988)
[»] scaffold0867 (1 HSPs)
scaffold0867 (77-173)||(4385-4481)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 5436697 - 5436271
Alignment:
Q  16 aataatgcagtagagagaactaaaatcaaacttaaaaaatcgatgtggttatatgcccgggattatgttgaaagcttggtttggtatcgttaaaagtaag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5436697 aataatgcagtagagagaactaaaatcaaacttaaaaaatcgatgtggttatatgcccgggattatgttgaaagcttggtttggtatcgttaaaagtaag 5436598  T
Q  116 ttcctcttcaacaaattacttgtttgaatttgtgtta------attcatgtatgttatataat-atgttatgccattgttttcttttggtgattttgatt 208  Q
    |||||||||||||| ||||||||||||||||||||||      |||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||    
T  5436597 ttcctcttcaacaagttacttgtttgaatttgtgttagtgttaattcatgtatgttatatagttatgttatgcgattgttttcttttggtgattttgatt 5436498  T
Q  209 taattgtaccgttgaacatttatctatattggtcatcttcaacggtttgacaatccttgaatcaaatgactttgttttgcttttatattttattgtaagc 308  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5436497 taattgtacggttgaacatttatctatattggtcatctttaacggtttgacaatcctagaatcaaatgactttgttttgcttttatattttattgtaagc 5436398  T
Q  309 gataagatgaaattgtttgaggtataaggtattctctcataaagaaaatcattatctcttgatattc-tttatgggttagtcttcaaaagatttaaaaca 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5436397 gataagatgaaattgtttgaggtataaggtattctctcataaagaaaatcattatctcttgatattcttttatgggttagtcttcaaaagatttaaaaca 5436298  T
Q  408 aaacttaagtatgaaatagcgtttcat 434  Q
    |||||||||||||||||||||||||||    
T  5436297 aaacttaagtatgaaatagcgtttcat 5436271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 554735 - 554783
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctctt 123  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  554735 ggattatgttgaaagcttagtttggtatagttgaaagtaagttcctctt 554783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 11970792 - 11970697
Alignment:
Q  79 tatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataatat 174  Q
    ||||||||||||||||||| |||| ||| |||||||||| |||| | |||| ||||||||||||||||||| |||| |||||||| ||||||||||    
T  11970792 tatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttgaatttgtgataatacatgtatgctatataatat 11970697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 11981490 - 11981399
Alignment:
Q  82 gttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataatat 174  Q
    |||||||||||||||| |||| ||| |||||||||| |||| |||||| ||||||||||||||||||| ||||||||||||| ||||| ||||    
T  11981490 gttgaaagcttggtttcgtattgttgaaagtaagtttctctacaacaatttacttgtttgaatttgtg-taattcatgtatgatatatcatat 11981399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 53775130 - 53775177
Alignment:
Q  108 aaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaatt 155  Q
    ||||||||||||||||| |  | |||||||||||||||||||||||||    
T  53775130 aaagtaagttcctcttccaagatttacttgtttgaatttgtgttaatt 53775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 10475512 - 10475574
Alignment:
Q  103 cgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgtt 165  Q
    |||| ||||| |||| |||||| ||| ||||||||||||||||| | ||| ||||||||||||    
T  10475512 cgttgaaagtgagtttctcttccacatattacttgtttgaatttatattatttcatgtatgtt 10475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 10482451 - 10482528
Alignment:
Q  74 gggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgtt 151  Q
    ||||||| |||||||| ||||||| |  || || ||||| |||| |||||| ||| ||||||||||||||||| ||||    
T  10482451 gggattacgttgaaagtttggtttcgactcattgaaagtgagtttctcttccacatattacttgtttgaatttatgtt 10482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 20405647 - 20405746
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataatat 174  Q
    |||||||||||||||||||||||  |||| |||||||||||||  ||||  |||| |||||||||||| ||||||||||||| ||  |||| ||||||||    
T  20405647 ggattatgttgaaagcttggtttcatatccttaaaagtaagtttgtctttgacaatttacttgtttgattttgtgttaattcttgcgtgttgtataatat 20405746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 20410927 - 20411026
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataatat 174  Q
    |||||||||||||||||||||||  |||| |||||||||||||  ||||  |||| |||||||||||| ||||||||||||| ||  |||| ||||||||    
T  20410927 ggattatgttgaaagcttggtttcatatccttaaaagtaagtttgtctttgacaatttacttgtttgattttgtgttaattcttgcgtgttgtataatat 20411026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 22063900 - 22063996
Alignment:
Q  77 attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataata 173  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||||| |||  | ||||||||||||||||||| ||||  ||||||| |||||||||    
T  22063900 attatgttgaaagcttgatttcttattgttgaaagtaagttcctctacaatgatttacttgtttgaatttgtgctaatatatgtatgctatataata 22063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 6864627 - 6864558
Alignment:
Q  78 ttatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttg 147  Q
    |||||||||||||||||||| || | ||| ||||||||||||| |||| | | |||||||||||||||||    
T  6864627 ttatgttgaaagcttggtttcgttttgttgaaagtaagttccttttcagctatttacttgtttgaatttg 6864558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 173
Target Start/End: Original strand, 22081119 - 22081216
Alignment:
Q  76 gattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataata 173  Q
    |||||||||||||| ||| |||  |||  || ||||||||||||| | |||| | ||||||||||||||||||| ||||  |||||| ||||||||||    
T  22081119 gattatgttgaaagtttgatttcttatgtttgaaagtaagttcctttacaacgatttacttgtttgaatttgtgctaatatatgtattttatataata 22081216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 22100751 - 22100847
Alignment:
Q  77 attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataata 173  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||| | |||  | |||||||||||| |||||| ||||  ||||||| |||||||||    
T  22100751 attatgttgaaagcttgatttcttattgttgaaagtaagttcctttacaatgatttacttgtttgattttgtgctaatatatgtatgctatataata 22100847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Original strand, 22070361 - 22070459
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataata 173  Q
    ||||||||||||||| ||| |||  ||| ||| ||||||||||||| |  ||| | ||||||||||||||||||| || |  ||||||| |||||||||    
T  22070361 ggattatgttgaaagtttgatttcttattgttgaaagtaagttcctttagaactatttacttgtttgaatttgtgctagtatatgtatgctatataata 22070459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 19597465 - 19597388
Alignment:
Q  79 tatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattc 156  Q
    ||||||||||||||||||| |  |  ||||||||||||| || |||||||| |||||||||||||  | |||||||||    
T  19597465 tatgttgaaagcttggtttcgactaattaaaagtaagtttcttttcaacaatttacttgtttgaagctatgttaattc 19597388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 160
Target Start/End: Original strand, 22064352 - 22064437
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgt 160  Q
    |||||||| |||||| ||||||| |||| ||| |||||||||| || | | || | ||||||||||||||||||||| || |||||    
T  22064352 ggattatgatgaaaggttggtttcgtattgttgaaagtaagtttctttacgacgatttacttgtttgaatttgtgttgatacatgt 22064437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 20374324 - 20374260
Alignment:
Q  77 attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttg 141  Q
    ||||||||||||| ||||||| ||||| || | |||||||| |||| |||||| |||||||||||    
T  20374324 attatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaatttacttgtttg 20374260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 20453066 - 20453109
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcgttaaaagtaagttc 118  Q
    |||||||||||||||||||||||| || | ||||||||||||||    
T  20453066 ggattatgttgaaagcttggtttgataaccttaaaagtaagttc 20453109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 20352344 - 20352402
Alignment:
Q  77 attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattact 135  Q
    ||||||||||||| |||||||  ||||||| |||||||||| |||| |||||| |||||    
T  20352344 attatgttgaaagtttggtttcttatcgttgaaagtaagtttctctacaacaatttact 20352402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 22021646 - 22021690
Alignment:
Q  79 tatgttgaaagcttggtttggtatcgttaaaagtaagttcctctt 123  Q
    ||||||||||||||||||| || || || ||||||||||||||||    
T  22021646 tatgttgaaagcttggttttgtgtcattgaaagtaagttcctctt 22021690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 20770900 - 20770988
Alignment:
Q  75 ggattatgttgaaagcttggtttggtatcg-----ttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcat 158  Q
    ||||||||||||||| ||||||||||||||     || ||||||||||||||||| |  | ||||||||||||||||||||||||||||    
T  20770900 ggattatgttgaaagtttggtttggtatcgacctgttgaaagtaagttcctcttcgatgatttacttgtttgaatttgtgttaattcat 20770988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 4481 - 4385
Alignment:
Q  77 attatgttgaaagcttggtttggtatcgttaaaagtaagttcctcttcaacaaattacttgtttgaatttgtgttaattcatgtatgttatataata 173  Q
    ||||||||||||||||| |||  ||| ||| ||||||||||||| | |||  | |||||||||||| |||||| ||||  ||||||| |||||||||    
T  4481 attatgttgaaagcttgatttcttattgttgaaagtaagttcctttacaatgatttacttgtttgattttgtgctaatatatgtatgctatataata 4385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University