View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1774_high_5 (Length: 263)
Name: NF1774_high_5
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1774_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 11 - 248
Target Start/End: Original strand, 51730007 - 51730247
Alignment:
| Q |
11 |
ttatacttttcaatacacnnnnnnnctaaagttcacacccaattttatgcttgatcaatacattattcacttgctgtgtttatgtgcagaa---catatg |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51730007 |
ttatacttttcaatacactttttttctaaagttcacacccaattttatgcttgatcaatacattattcacttgctgtgtttatgtgcagaagaacatatg |
51730106 |
T |
|
| Q |
108 |
tccgcattttgaatcatgtaaagaaaattggtgctcaaagagagtttgtgagtgattattgaattgaaatataaggatatttctatggaggctagactc- |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
51730107 |
tccgcattttgaatcatgtaaagaaaattggtgcacatagagagtttgtgagtgattattgaattg-aatataaggatatttctatggaggctagactct |
51730205 |
T |
|
| Q |
207 |
ttagttgtcatgagaagcaatatacaacgacattctatattg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51730206 |
ttagttgtcatgagaagcaatatacaacgacattctatattg |
51730247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University