View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1774_low_3 (Length: 373)

Name: NF1774_low_3
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1774_low_3
NF1774_low_3
[»] chr6 (3 HSPs)
chr6 (20-359)||(21481050-21481382)
chr6 (80-195)||(19700851-19700966)
chr6 (80-178)||(766903-767001)
[»] chr2 (5 HSPs)
chr2 (80-359)||(26661184-26661464)
chr2 (111-195)||(6049616-6049700)
chr2 (78-119)||(26667111-26667152)
chr2 (39-76)||(35729106-35729143)
chr2 (78-122)||(6051977-6052021)
[»] scaffold0500 (1 HSPs)
scaffold0500 (75-161)||(358-444)
[»] chr4 (3 HSPs)
chr4 (111-195)||(13894016-13894100)
chr4 (80-132)||(20856391-20856443)
chr4 (39-75)||(40049550-40049586)
[»] chr3 (2 HSPs)
chr3 (76-195)||(15762316-15762435)
chr3 (253-321)||(15762179-15762247)
[»] chr1 (4 HSPs)
chr1 (111-195)||(44305833-44305917)
chr1 (78-186)||(22893466-22893574)
chr1 (85-227)||(29845297-29845439)
chr1 (248-290)||(22893647-22893689)
[»] chr7 (6 HSPs)
chr7 (111-194)||(13331874-13331957)
chr7 (111-194)||(13342789-13342872)
chr7 (79-122)||(13323815-13323858)
chr7 (253-352)||(13331704-13331803)
chr7 (23-66)||(22707193-22707236)
chr7 (39-68)||(22689772-22689801)
[»] chr5 (3 HSPs)
chr5 (111-194)||(5672345-5672428)
chr5 (78-107)||(21635659-21635688)
chr5 (78-107)||(21643906-21643935)
[»] scaffold0586 (2 HSPs)
scaffold0586 (78-195)||(9280-9397)
scaffold0586 (248-290)||(9462-9504)
[»] chr8 (4 HSPs)
chr8 (81-195)||(10637313-10637427)
chr8 (81-195)||(32718167-32718281)
chr8 (248-290)||(10637492-10637534)
chr8 (33-74)||(11923007-11923048)


Alignment Details
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 359
Target Start/End: Original strand, 21481050 - 21481382
Alignment:
Q  20 gcataattaaggcttaaattgtgcaacattgcacatgttagaaaaacccataaaaatcttagggggtgtttgtttgagggttacaaaaataattcctagg 119  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||    
T  21481050 gcataattaaggcttaaattgtgcaacattgtacatgttagaaaaacccataaa--------ggggtgtttgtttgagggttacaaaaataattcctagg 21481141  T
Q  120 aatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttctcataaaagtcttttacccacgtt 219  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||| |||    
T  21481142 aatttaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatataccaaggaatacatttttctcaggaaagtcttttacccatgtt 21481241  T
Q  220 ca-ccccatgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaat 318  Q
    || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  21481242 cacccccatgttctacccatttttcctgtcttttattcccctgagatagcatgggaaagttttattcccagagaataaaaaccatgatctccaacaaaat 21481341  T
Q  319 acctctcctacccttgccattctcgctattctttttctctg 359  Q
    |||||| |||||||||||||||  |||||||||||||||||    
T  21481342 acctcttctacccttgccattcctgctattctttttctctg 21481382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 80 - 195
Target Start/End: Original strand, 19700851 - 19700966
Alignment:
Q  80 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 179  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||| || ||| ||||||||||||  ||||||  ||||||||||| |    
T  19700851 agggggtgtttgtttgagggtaataaaaataattccaaggaatctaaggctggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtc 19700950  T
Q  180 aaggaatacatttttc 195  Q
     ||||||||| |||||    
T  19700951 caggaatacaattttc 19700966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 80 - 178
Target Start/End: Complemental strand, 767001 - 766903
Alignment:
Q  80 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgc 178  Q
    |||||| ||||||||||| ||||||| |||| || ||| |||||||||| || |||| | |||| || ||||||||||||| || ||| | ||||||||    
T  767001 agggggcgtttgtttgagagttacaataatagtttctatgaatctaaggatgaaattaagtattcctctgtttggtagatgagagtaagaaaaatatgc 766903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 80 - 359
Target Start/End: Original strand, 26661184 - 26661464
Alignment:
Q  80 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 179  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26661184 aggggatgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcc 26661283  T
Q  180 aaggaatacatttttctcataaaagtcttttacccacgttc-accccatgttctacccatttttcctgtctttcattcccatgagatagcatgggaaagt 278  Q
    |||||||||||||||| ||  ||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26661284 aaggaatacatttttcccaggaaagtcttttacccacgttctcccccacgttctacccatttttcctgtctttcattccaatgagatagcatgggaaagt 26661383  T
Q  279 tttatttccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattctttttctctg 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  26661384 tttatttccagggaataaaaaccatgatctccaacaaaatacctcttctacccttgccattcccgctattctttttctctg 26661464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 6049616 - 6049700
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 195  Q
    |||||||||||||||||||||||||| || |||||| ||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  6049616 attcctaggaatctaaggctggaattaaagattgctatgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttc 6049700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 26667152 - 26667111
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaaataattcctagg 119  Q
    |||||||| ||||||||||||||||||||| | |||||||||    
T  26667152 ttagggggcgtttgtttgagggttacaaaatttattcctagg 26667111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 35729143 - 35729106
Alignment:
Q  39 tgtgcaacattgcacatgttagaaaaacccataaaaat 76  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  35729143 tgtgcaatattgcacatgttagacaaacccataaaaat 35729106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 6052021 - 6051977
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaaataattcctaggaat 122  Q
    |||||||||||||||||||||||| ||||| | ||||| ||||||    
T  6052021 ttagggggtgtttgtttgagggtttcaaaacttattccaaggaat 6051977  T

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Target: scaffold0500 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 444 - 358
Alignment:
Q  75 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  444 atcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgg 358  T

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Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 13894100 - 13894016
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 195  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  13894100 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaggaatacatttttc 13894016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 20856391 - 20856443
Alignment:
Q  80 agggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctgg 132  Q
    |||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  20856391 agggggtgtttgattgagggttagaaaaatagttcctaggaatctaaggctgg 20856443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 40049586 - 40049550
Alignment:
Q  39 tgtgcaacattgcacatgttagaaaaacccataaaaa 75  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  40049586 tgtgcaatattgcacatgttagacaaacccataaaaa 40049550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 195
Target Start/End: Complemental strand, 15762435 - 15762316
Alignment:
Q  76 tcttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaata 175  Q
    |||||||| ||||||||| |||||||| || || |||||  ||||||||||||||||||| ||||||| ||||||||||||| |||| |  |||||||||    
T  15762435 tcttagggtgtgtttgttagagggttaaaacaaaaattctcaggaatctaaggctggaatcgaatattcctttgtttggtaggtgggtaccacacaaata 15762336  T
Q  176 tgccaaggaatacatttttc 195  Q
    |||| |||||||||||||||    
T  15762335 tgcctaggaatacatttttc 15762316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 15762247 - 15762179
Alignment:
Q  253 attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacc 321  Q
    |||||||||| ||||| |||||||| |||||| ||| |||||  |||||||||||| ||| ||||||||    
T  15762247 attcccatgaaatagcttgggaaagatttattcccatggaatggaaaccatgatcttcaataaaatacc 15762179  T

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Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 195
Target Start/End: Original strand, 44305833 - 44305917
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacatttttc 195  Q
    |||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| | |||||||||||||    
T  44305833 attcctaggaatctaaggctggaattaaagattgctttgtttggtagatgggaaaaacaaaaatatgcctaagaatacatttttc 44305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 186
Target Start/End: Original strand, 22893466 - 22893574
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 177  Q
    |||||||||||||||||||| ||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  |||||||||||    
T  22893466 ttagggggtgtttgtttgagagtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatg 22893565  T
Q  178 ccaaggaat 186  Q
     ||||||||    
T  22893566 tcaaggaat 22893574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 29845297 - 29845439
Alignment:
Q  85 gtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaagga 184  Q
    |||||||||| ||||||||||||||||||   |||||  ||||| || |||| |||||| ||||||||||||||| |||| |||  ||||||||  ||||    
T  29845297 gtgtttgtttaagggttacaaaaataattttaaggaaagtaaggttgaaattaaatattcctttgtttggtagattggaacaaccaaaatatgcttagga 29845396  T
Q  185 atacatttttctcataaaagtcttttacccacgttcaccccat 227  Q
    ||| ||||| ||||  |||||| || ||||||||||| |||||    
T  29845397 ataaattttactcaggaaagtcattcacccacgttcatcccat 29845439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 22893647 - 22893689
Alignment:
Q  248 ctttcattcccatgagatagcatgggaaagttttatttccagg 290  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  22893647 cttttattcccatgagatagcttgggaaagttttattcccagg 22893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 13331957 - 13331874
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 194  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||| ||||||||||||||    
T  13331957 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgcccaggaatacattttt 13331874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 13342872 - 13342789
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 194  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  13342872 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 13342789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 13323815 - 13323858
Alignment:
Q  79 tagggggtgtttgtttgagggttacaaaaataattcctaggaat 122  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  13323815 tagggggtgtttgtttgagggttacaaaatttattcccaggaat 13323858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 13331803 - 13331704
Alignment:
Q  253 attcccatgagatagcatgggaaagttttatttccagggaataaaaaccatgatctccaacaaaatacctctcctacccttgccattctcgctattcttt 352  Q
    |||||||||| ||||| ||||||||||| ||| ||||| | | ||| ||||||||| ||| |||| |||  |  | |||||||||||| |||||||||||    
T  13331803 attcccatgaaatagcttgggaaagtttcattcccaggaattgaaacccatgatcttcaataaaaaaccatttttgcccttgccattcccgctattcttt 13331704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 22707236 - 22707193
Alignment:
Q  23 taattaaggcttaaattgtgcaacattgcacatgttagaaaaac 66  Q
    ||||||||||||||  |||||||||||||||| |||||||||||    
T  22707236 taattaaggcttaagctgtgcaacattgcacaggttagaaaaac 22707193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 22689772 - 22689801
Alignment:
Q  39 tgtgcaacattgcacatgttagaaaaaccc 68  Q
    ||||||||||||||||||||||||||||||    
T  22689772 tgtgcaacattgcacatgttagaaaaaccc 22689801  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 111 - 194
Target Start/End: Complemental strand, 5672428 - 5672345
Alignment:
Q  111 attcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgccaaggaatacattttt 194  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||  ||||||||||||||    
T  5672428 attcctaggaatctaaggctggaattgaatatttctttatttggtagatgggaaccacacaaaaatgctcaggaatacattttt 5672345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 21635659 - 21635688
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaa 107  Q
    ||||||||||||||||||||||||||||||    
T  21635659 ttagggggtgtttgtttgagggttacaaaa 21635688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 21643906 - 21643935
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaa 107  Q
    ||||||||||||||||||||||||||||||    
T  21643906 ttagggggtgtttgtttgagggttacaaaa 21643935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 9280 - 9397
Alignment:
Q  78 ttagggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatg 177  Q
    |||||||||||||||||||||||   |||||||||| | |||||||||||| ||||||| || ||| ||||||||||||| ||||||  |||||||||||    
T  9280 ttagggggtgtttgtttgagggtagtaaaaataatttcaaggaatctaaggttggaattaaacattcctttgtttggtaggtgggaaccacacaaatatg 9379  T
Q  178 ccaaggaatacatttttc 195  Q
     | |||||| || |||||    
T  9380 tccaggaatgcaattttc 9397  T

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Target: scaffold0586; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 9462 - 9504
Alignment:
Q  248 ctttcattcccatgagatagcatgggaaagttttatttccagg 290  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  9462 cttttattcccatgagatagcttgggaaagttttattcccagg 9504  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Original strand, 10637313 - 10637427
Alignment:
Q  81 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 180  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  10637313 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtcc 10637412  T
Q  181 aggaatacatttttc 195  Q
    |||||| || |||||    
T  10637413 aggaatgcaattttc 10637427  T

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Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 81 - 195
Target Start/End: Complemental strand, 32718281 - 32718167
Alignment:
Q  81 gggggtgtttgtttgagggttacaaaaataattcctaggaatctaaggctggaattgaatattgctttgtttggtagatgggaataacacaaatatgcca 180  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| ||||||| || ||| ||||||||||||  ||||||  ||||||||||| |     
T  32718281 gggggtgtttgtttgagggtagtaaaaataattccaaggaatctaaggttggaattaaacattcctttgtttggtaagtgggaaccacacaaatatgtct 32718182  T
Q  181 aggaatacatttttc 195  Q
    |||||| || |||||    
T  32718181 aggaatgcaattttc 32718167  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 290
Target Start/End: Original strand, 10637492 - 10637534
Alignment:
Q  248 ctttcattcccatgagatagcatgggaaagttttatttccagg 290  Q
    |||| |||||||||||||||| ||||||||||||||| |||||    
T  10637492 cttttattcccatgagatagcttgggaaagttttattcccagg 10637534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 11923048 - 11923007
Alignment:
Q  33 ttaaattgtgcaacattgcacatgttagaaaaacccataaaa 74  Q
    |||| |||||||| ||||||||||||||| ||||||||||||    
T  11923048 ttaacttgtgcaatattgcacatgttagacaaacccataaaa 11923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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