View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1774_low_5 (Length: 279)
Name: NF1774_low_5
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1774_low_5 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: scaffold0312 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 10608 - 10359
Alignment:
| Q |
19 |
ctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
10608 |
ctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttga |
10509 |
T |
|
| Q |
119 |
agtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctca |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
10508 |
agtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctca |
10409 |
T |
|
| Q |
219 |
cttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
268 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10408 |
cttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
10359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 419963 - 420212
Alignment:
| Q |
19 |
ctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
419963 |
ctttcttgatgtttaacttgttgattatgtattccaccttgtttaatgaaaaaggtattgaattagcaacttggcgcggcaagaatgttgccgcatttga |
420062 |
T |
|
| Q |
119 |
agtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctca |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
420063 |
agtggtcttagtgaattgcaagttcagttttgttccatgatgcaagtccttttccaaaaagaagagtgctacatttggtttatcatgtaactgagtctca |
420162 |
T |
|
| Q |
219 |
cttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
420163 |
cttgcagcataattgtaactaaatggagaacgtccaactccaacattcat |
420212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 975198 - 974950
Alignment:
| Q |
19 |
ctttcttgatgtttaacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttga |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
975198 |
ctttcttgatgtttaacttgttgattatgtattccatcttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggctgcatttga |
975099 |
T |
|
| Q |
119 |
agtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactgagtctca |
218 |
Q |
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|
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
975098 |
agtggtcttagagaattgcaagttcagttttgttccatgatgcaggtccttttccagaaagaagagtgctacatttggtttatcatgtaattgagtctca |
974999 |
T |
|
| Q |
219 |
cttgcagcataattgtaactaaatggagaacgtccaactccaacattca |
267 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
974998 |
cttgcagcataattataaataaatggagaacgtccaactccaacattca |
974950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 936296 - 936173
Alignment:
| Q |
112 |
catttgaagtggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttccnnnnnnnngagtgctacatttggtttatcatgtaactg |
211 |
Q |
| |
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|||||||| |||| || ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
936296 |
catttgaattggtttttgtgaattgcaagttcaactttgttccttgatgcaaatccttttctaagaagaaaagtgctacatttggtttatcatgtaactg |
936197 |
T |
|
| Q |
212 |
agtctcacttgcagcataattgta |
235 |
Q |
| |
|
|| |||||||||||||||||||| |
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| T |
936196 |
tgtttcacttgcagcataattgta |
936173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 924149 - 924022
Alignment:
| Q |
45 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
144 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| ||||||||||||| || ||||||||||| || ||| | |||||| |||||||||| ||||| |
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| T |
924149 |
atgttttccactttgtttgatgaaaatggtatggaattagcaacttcacgaggcaagaatgttgctccataatctgaggtctttgtgaattgcatgttca |
924050 |
T |
|
| Q |
145 |
attttgttccatgatgcaagtccttttc |
172 |
Q |
| |
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||||||| |||| ||||||||||||||| |
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| T |
924049 |
attttgtaccattatgcaagtccttttc |
924022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 960259 - 960123
Alignment:
| Q |
33 |
aacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgc------atttgaagtggtct |
126 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| | ||||||||| | | | ||||||||| |||| |
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| T |
960259 |
aacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaacttctctaggcaagaattttgttccattattatttgaagttgtct |
960160 |
T |
|
| Q |
127 |
tagtgaattgcaagttcaattttgttccatgatgcaa |
163 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
960159 |
ctttgaattgcaagttcaattttgttccatgatgcaa |
960123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 942298 - 942241
Alignment:
| Q |
33 |
aacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
90 |
Q |
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|
|||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
942298 |
aacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
942241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 949287 - 949230
Alignment:
| Q |
33 |
aacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
90 |
Q |
| |
|
|||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
949287 |
aacttgttgagtatgttttccaatttgtttgatgaaaagggtatggaattagcaactt |
949230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 971568 - 971511
Alignment:
| Q |
33 |
aacttgttgattatgtattccaccttgtttgatgaaaagggtattgaattagcaactt |
90 |
Q |
| |
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|||||||||| ||||| ||||| |||||||||||||||||||| ||||||||||||| |
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| T |
971568 |
aacttgttgagtatgttttccattttgtttgatgaaaagggtatggaattagcaactt |
971511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 942208 - 942174
Alignment:
| Q |
129 |
gtgaattgcaagttcaattttgttccatgatgcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
942208 |
gtgaattgcaagttcaattttgttccatgatgcaa |
942174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 163
Target Start/End: Complemental strand, 971478 - 971444
Alignment:
| Q |
129 |
gtgaattgcaagttcaattttgttccatgatgcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
971478 |
gtgaattgcaagttcaattttgttccatgatgcaa |
971444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 163
Target Start/End: Complemental strand, 949183 - 949151
Alignment:
| Q |
131 |
gaattgcaagttcaattttgttccatgatgcaa |
163 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
949183 |
gaattgcaagttcaattttgttccatgatgcaa |
949151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 901895 - 901772
Alignment:
| Q |
50 |
ttccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttcaatttt |
149 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||||||||||| || ||||| ||||| | ||| | |||||| ||||||||| |||||||||| |
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| T |
901895 |
ttccactttgtttgatgaaaagggaatggaattagcaacttcacgaggcaaaaatgttacttcataatttgaggtctttttgaattgcatgttcaatttt |
901796 |
T |
|
| Q |
150 |
gttccatgatgcaagtccttttcc |
173 |
Q |
| |
|
|| ||| |||||||||| |||||| |
|
|
| T |
901795 |
gtaccaagatgcaagtctttttcc |
901772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 909539 - 909488
Alignment:
| Q |
122 |
ggtcttagtgaattgcaagttcaattttgttccatgatgcaagtccttttcc |
173 |
Q |
| |
|
|||||| |||||||| | ||| |||||||| ||||||||||||||||||||| |
|
|
| T |
909539 |
ggtctttgtgaattgtatgttgaattttgtaccatgatgcaagtccttttcc |
909488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 916098 - 915980
Alignment:
| Q |
45 |
atgtattccaccttgtttgatgaaaagggtattgaattagcaacttggcgcggcaagaatgtggccgcatttgaagtggtcttagtgaattgcaagttca |
144 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||| |||||||| |||| || ||||||||||| || | |||||| |||||||||| ||||| |
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| T |
916098 |
atgttttccactttgtttgatgaaaatggtatggaattagcgacttcacgaggcaagaatgttgctcc---------ggtctttgtgaattgcatgttca |
916008 |
T |
|
| Q |
145 |
attttgttccatgatgcaagtccttttc |
172 |
Q |
| |
|
||||||| |||| |||||||||||||| |
|
|
| T |
916007 |
attttgtaccattgtgcaagtccttttc |
915980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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