View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1774_low_7 (Length: 258)
Name: NF1774_low_7
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1774_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 25895757 - 25895518
Alignment:
| Q |
11 |
atgagtattaactggtggtggaggtgtggggggagcagaagtagtaaggggcagggatgcattgggtgaagttaagtgggtggcagaaaaggaaataggt |
110 |
Q |
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| T |
25895757 |
atgagtattaactggtggtggaggtgtggggggagcagaagtagtaaggggcagggatgcattgggtgaagttaagtgggtggcagaaaaggaaatatgt |
25895658 |
T |
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| Q |
111 |
gtagatgtgggttgatttattgaggaagttgtggaaggaagtggattt-tagaagaggacagatgatgggttgattgagagttgggagatgggaaattct |
209 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25895657 |
gtagatgtgggttgatttatagaggaagttgtggaaggaagtggatttgtagaagaggacagatgatgggttgattgagagttgggagatgggaaattct |
25895558 |
T |
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| Q |
210 |
gatctgtaggggaagttataggaggggcaggtgatgatgt |
249 |
Q |
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|||||||||||||||||||||||||||||| ||||||||| |
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| T |
25895557 |
gatctgtaggggaagttataggaggggcagctgatgatgt |
25895518 |
T |
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