View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1774_low_8 (Length: 235)
Name: NF1774_low_8
Description: NF1774
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1774_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 232
Target Start/End: Original strand, 3947026 - 3947242
Alignment:
| Q |
16 |
caaatatgcttttgtttgttgcaaatacgaaaccaaacacacatagttatagacttctagtagcttatataccactaccagtaacacatcacattgaaag |
115 |
Q |
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| T |
3947026 |
caaatatgcttttgtttgttgcaaacacgaaaccaaacacacatagttatagacttctagtagcttatataccactaccagtaacacatcacattgaaag |
3947125 |
T |
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| Q |
116 |
tatttatcacatgaacatcaaacatcattcaaaattaaaatagacttatttctaagaaaaacagaaccacgtgagtcttaggcagcaacagtggcagttt |
215 |
Q |
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| T |
3947126 |
tatttatcacatgaacaccaaacatcattcaaaattaaaatagacttatttctaagaaaaacagaaccacatgagtcttaggcagcaacagtggcagttt |
3947225 |
T |
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| Q |
216 |
cagaaggtttgttctca |
232 |
Q |
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| T |
3947226 |
cagaaggtttgttctca |
3947242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 110 - 227
Target Start/End: Original strand, 3940442 - 3940559
Alignment:
| Q |
110 |
tgaaagtatttatcacatgaacatcaaacatcattcaaaattaaaatagacttatttctaagaaaaacagaaccacgtgagtcttaggcagcaacagtgg |
209 |
Q |
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||||| |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3940442 |
tgaaactatttatcacattaacatcaaaaatcatttgaaattaaaatagacttatttctaagaaaaacagaaccacgtgagtcttaggcagcaacagggg |
3940541 |
T |
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| Q |
210 |
cagtttcagaaggtttgt |
227 |
Q |
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| T |
3940542 |
cagtttcagaaggtttgt |
3940559 |
T |
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