View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_high_4 (Length: 516)
Name: NF17750_high_4
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 32030116 - 32029614
Alignment:
| Q |
1 |
cagttttataggcttgtttatctctttcctctatttgttctaaagggggttacagctgcatgatacagaagaagagaaatgaaaaggttcttaccaagtc |
100 |
Q |
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| T |
32030116 |
cagttttataggcttgtgtatctctttcctctatttgttctaaagggggttacagctgcatgatacagaagaagagaaatgaaaaggttcttaccaagtc |
32030017 |
T |
|
| Q |
101 |
tgccagtggaatcacaactagattttcattgcgaaggcgagaaaatgcccttgatctgagaattccaaatgcccagaagaagtcatccagcgtcacagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32030016 |
tgccagtggaatcacaactagattttcattgcgaaggcgagaaaatgcccttgatctgagaattccaaatgcccagaagaagtcatccagcgtcacagga |
32029917 |
T |
|
| Q |
201 |
gaaggaaaaagcttcttattagggagaatgatttccttttccagtttcagacattcattcttcacatattctttcacagacagtgttgtgttcagaagtt |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029916 |
gaaggaaaaagcttcttattagggagaatgatttctttttccagtttcagacattcattcttcacatattctttcacagacagtgttgtgttcagaagtt |
32029817 |
T |
|
| Q |
301 |
gagtacctactcaattcagttcattcaaagttcaaggtgtggtgaaacatatcaaattactccaaagaacaaatttttattgcataattaatattttaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
32029816 |
gagtacctactcaattcagttcattcaaagttcaaggtgtggtgaaacatatcaaattactccaaagcacaaatttttattgcataatcaatattttaaa |
32029717 |
T |
|
| Q |
401 |
acatggttttgtatcacaaacattgcatgactaaccttgaagttcttgaagctcttcctctgacctgtactggaataaccaattaccaactgaatcaacc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029716 |
acatggttttgtatcacaaacattgcatgactaaccttgaagttcttggagctcttcctctgacctgtactggaataaccaattaccaactgaatcaacc |
32029617 |
T |
|
| Q |
501 |
aac |
503 |
Q |
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||| |
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| T |
32029616 |
aac |
32029614 |
T |
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