View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_11 (Length: 398)
Name: NF17750_low_11
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 3 - 380
Target Start/End: Complemental strand, 25688941 - 25688568
Alignment:
| Q |
3 |
aaatagagaagttggatgtggggctaaagccccacatagtcctatagtagatccgcccctgtctctactcttacttttgttcttgaagagagatacacga |
102 |
Q |
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| T |
25688941 |
aaatagagaagttggatgtggggctttagccccacatagtcctaaagtatatccgccc--gtctctactcttacttttgttcttgaagagagatacacga |
25688844 |
T |
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| Q |
103 |
acaagagattttagtcttagtgctactgtgtggacaatgtgtaaaaggttaacatgcgattggaaagccacttttcacattatggatatgagtttggtca |
202 |
Q |
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|||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25688843 |
acaagatattttagtcctag--ctactgggtggacaatgtgtaaaaggttaacatgcgattggaaagccacttttcacattatggatatgagtttggtac |
25688746 |
T |
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| Q |
203 |
attatatgatttctttgttcaaacctatttaggatggtttagtggtgttgatctgaaaccatggaatatttttcttagagtctcagattcggttcttttc |
302 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
25688745 |
tctatatgatttcttcgttcaaacctatttaagatggtttagtggtgttgatttggaaccatggaatatttttcttagagtctcagattcgattctttcc |
25688646 |
T |
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| Q |
303 |
agtataaattcgcaagaatgatcaaacaaacatgcattcaatcaagcaattagttaattccaaagctatatagtttat |
380 |
Q |
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| T |
25688645 |
tgtataaattcgcatgaatggcaaaacaaacatgcattcaatcaagcaattagttaattccaaagctatatagtttat |
25688568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 8062996 - 8063050
Alignment:
| Q |
3 |
aaatagagaagttggatgtggggctaaagccccacatagtcctatagtagatccg |
57 |
Q |
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|||||| |||||||||||||||||| |||||||||||| |||||| | |||||| |
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| T |
8062996 |
aaatagggaagttggatgtggggctttagccccacatagccctataatggatccg |
8063050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 9890823 - 9890882
Alignment:
| Q |
3 |
aaatagagaagttggatgtggggctaaagccccacatagtcctatagtagatccgcccct |
62 |
Q |
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||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |
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| T |
9890823 |
aaatagagaagttggatgtggggctttagccccacatagtcattgagtagatccgcccct |
9890882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 8068935 - 8068875
Alignment:
| Q |
3 |
aaatagagaagttggatgtggggctaaagccccacatagtcctatagtagatccgcccctg |
63 |
Q |
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||||| ||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
8068935 |
aaataaagaagttggatgtggggctttagccccacatagtctttgagtagatccgcccctg |
8068875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9023195 - 9023150
Alignment:
| Q |
18 |
atgtggggctaaagccccacatagtcctatagtagatccgcccctg |
63 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
9023195 |
atgtggggctaaagccccacatagccctaacatagatccgcccctg |
9023150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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