View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_14 (Length: 377)
Name: NF17750_low_14
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 12365385 - 12365735
Alignment:
| Q |
11 |
cagagactactggcaaacccaagacagtcttcactgtgcacagatcatatcacatagatcctaggactaaattcctcatttgtaaaaattatgcagatat |
110 |
Q |
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| T |
12365385 |
cagaggctattggcaaactcaagacagtcttaactgtgcacagaccatatcagatagatcccaggactaaattccttatttgtaaaaattatgcagatat |
12365484 |
T |
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| Q |
111 |
atgggaaactattgatgattatcctccaagcttaaaggttaccaaagacttaatggattatatcagttttattaatctccaagacagagaaaagactcaa |
210 |
Q |
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| T |
12365485 |
atgggaaactattgatgattatcctccaagcttaaaggttaccaaagacttaatggattatatcaattttactaatctccatcacagagaaaagactcaa |
12365584 |
T |
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| Q |
211 |
attgatactatttgtataagtcatgggaatcttccaccgcaattcaaatcagtcaatcctcaagaatttggggaaagctccagataggcatctcaaccag |
310 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |
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| T |
12365585 |
attgatactacatgtataagtcatgggaatcttccaccgcaattcaaaccagtcaatcctcaagaaattggggaaagctctagacaggcatctcaaccag |
12365684 |
T |
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| Q |
311 |
aacaagaattttaggaaaatattgaacaatagttcacacaaatgaattttg |
361 |
Q |
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||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
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| T |
12365685 |
aacaagactttcaggaaaatattgaacaacagttcacacaaatgaattttg |
12365735 |
T |
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