View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17750_low_15 (Length: 343)

Name: NF17750_low_15
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17750_low_15
NF17750_low_15
[»] chr1 (3 HSPs)
chr1 (1-324)||(10299523-10299846)
chr1 (241-320)||(47919832-47919911)
chr1 (241-323)||(47911018-47911100)
[»] chr3 (4 HSPs)
chr3 (238-323)||(40203600-40203685)
chr3 (238-323)||(40199437-40199522)
chr3 (238-323)||(40207756-40207841)
chr3 (242-311)||(44307285-44307354)
[»] chr5 (1 HSPs)
chr5 (233-317)||(42369784-42369868)


Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 10299523 - 10299846
Alignment:
Q  1 caaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatattgaacaactccacaaatcttgtacttaaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299523 caaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatattgaacaactccacaaatcttgtacttaaagc 10299622  T
Q  101 caccaaggtatgctctaacagcatcagtgtaagtgtagtttcttttcccattgagttgatcaccggtacggtaacaaacagaaagaagagtggaggtgta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10299623 caccaaggtatgctctaacagcatcagtgtaagtgtagtttcttttgccattgagttgatcaccggtacgataacaaacagaaagaagagtggaggtgta 10299722  T
Q  201 gtaagtaacaaacgagaaaagaagcatcattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10299723 gtaagtaacaaacgagaaaagaagcatcattgatggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcaca 10299822  T
Q  301 gctgtgattatgtgtgcacttgct 324  Q
    ||||||||||||||||||||||||    
T  10299823 gctgtgattatgtgtgcacttgct 10299846  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 320
Target Start/End: Original strand, 47919832 - 47919911
Alignment:
Q  241 gcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcact 320  Q
    |||||||| || | |||||||| |||||||||||| |||| ||||||||| || |||||||| || | ||||||||||||    
T  47919832 gcaatccagcccaattgtgcaacagcccatgccaatgacaacactccagatcctatcacagcagtcactatgtgtgcact 47919911  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 47911018 - 47911100
Alignment:
Q  241 gcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgc 323  Q
    |||||||| || | |||||||| |||||||||||| |||| ||||||||| || || ||||| || | |||||||||||||||    
T  47911018 gcaatccaacccaattgtgcaacagcccatgccaatgacaacactccagatcctattacagcagtcactatgtgtgcacttgc 47911100  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 40203685 - 40203600
Alignment:
Q  238 ccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgc 323  Q
    |||||||||||||||||||| ||||||||||| || | ||||||||||||||| || ||||||||||| ||||  |||||||||||    
T  40203685 ccagcaatccatccaagttgagcaatagcccaagctagagacagcactccagaccctatcacagctgttattacatgtgcacttgc 40203600  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 40199522 - 40199437
Alignment:
Q  238 ccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgc 323  Q
    |||||||||||||||||||| ||||||||||| |  | ||||||||||||||| || | ||||||||| ||||  |||||||||||    
T  40199522 ccagcaatccatccaagttgagcaatagcccaagatagagacagcactccagaccctaccacagctgttattacatgtgcacttgc 40199437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 323
Target Start/End: Complemental strand, 40207841 - 40207756
Alignment:
Q  238 ccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgcacttgc 323  Q
    |||||||||||||| ||||| ||||||||||| || | |||||| |||||||| || | ||||||||| ||||  |||||||||||    
T  40207841 ccagcaatccatccgagttgagcaatagcccaagctagagacagaactccagaccctaccacagctgttattacatgtgcacttgc 40207756  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 44307285 - 44307354
Alignment:
Q  242 caatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattat 311  Q
    ||||||| || | ||||||| |||||||||| || || ||||| ||||| |||||||||||||| |||||    
T  44307285 caatccaacccaattgtgcagtagcccatgctaaggatagcaccccagacccaatcacagctgttattat 44307354  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 317
Target Start/End: Complemental strand, 42369868 - 42369784
Alignment:
Q  233 atggtccagcaatccatccaagttgtgcaatagcccatgccaaagacagcactccagaaccaatcacagctgtgattatgtgtgc 317  Q
    |||||||| ||||||||||||||||||||||   ||||| |||||| | |||||| || || |||||  |||| | |||||||||    
T  42369868 atggtccaacaatccatccaagttgtgcaatgctccatggcaaagataacactcctgatcctatcacccctgtcactatgtgtgc 42369784  T

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