View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_17 (Length: 324)
Name: NF17750_low_17
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 46463227 - 46463524
Alignment:
| Q |
9 |
gattattctcttattgttaagggtttttctacaaactaattgtgttcaaaactattagggagatttgagtgtatatttgggcatcacaagaatattatta |
108 |
Q |
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| T |
46463227 |
gattattctcttattgttaagggtttttctacaaaataattgtgttcaaaactattagggagatttgagtgtatatttgggcatcacaagaatattatta |
46463326 |
T |
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| Q |
109 |
ctgaagtcatgcgcggagaatcgatctaatccaaaaatatttctacaatggtattcaacaatgatatttgagtcactctttctag-nnnnnnnnnnnaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46463327 |
ctgaagtcatgcgcggagaatcgatctaatccaaaaatatttctacaatggtattcaacaatgatatttgagtcactctttctagttttttttttttaaa |
46463426 |
T |
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| Q |
208 |
tggaaaatgttagtaattagttgttaatttaatatttatcgctcatttgggtttgaatcccggactccaactccttattctttaattaaaattagttg |
305 |
Q |
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| T |
46463427 |
tggaaaatgttaggaattagttgttaatttaatatttatcgctcatttgggtttgaatcccggactccaactccttattctttaattaaaattagttg |
46463524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 10799311 - 10799271
Alignment:
| Q |
205 |
aaatggaaaatgttagtaattagttgttaatttaatattta |
245 |
Q |
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|||| |||||||||||||||||||||||| |||||||||| |
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| T |
10799311 |
aaatcgaaaatgttagtaattagttgttagattaatattta |
10799271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 49416346 - 49416314
Alignment:
| Q |
212 |
aaatgttagtaattagttgttaatttaatattt |
244 |
Q |
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| T |
49416346 |
aaatgttagtaattagttgttaaattaatattt |
49416314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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