View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17750_low_20 (Length: 272)
Name: NF17750_low_20
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11550906 - 11550653
Alignment:
| Q |
1 |
gagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgttgtcaactgtgaccagacaaacattgccatctttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11550906 |
gagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgttgtcagctgtgaccagacaaacattgccatctttaa |
11550807 |
T |
|
| Q |
101 |
ttaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11550806 |
ttaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaag |
11550707 |
T |
|
| Q |
201 |
tggcttcagcgtaacaacctgcatctgcgttgcctgcaatgtaacacagcactt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11550706 |
tggcttcagcgtaacaacctgcatctgcgttgcctgcaatgtaacacagcactt |
11550653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 11562332 - 11562586
Alignment:
| Q |
1 |
gagtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcatatagtcttgtt-gtcaactgtgaccagacaaacattgccatcttta |
99 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
11562332 |
gagtaaaagcagaacaaagtaccaacatccatatcctaaaagttcatgtttcatatggtcttgtttgtcaactgtgaccagacaaaccttgccatcttta |
11562431 |
T |
|
| Q |
100 |
attaattctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaa |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11562432 |
attagttctactaagttgaaaagattagggtggttcaaaagacaaaaagctaaaaactctgcgagaaattccttgttctgttgaaatccatttctgtcaa |
11562531 |
T |
|
| Q |
200 |
gtggcttcagcgtaacaacctgcatctgcgttgcctgcaatgtaacacagcactt |
254 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||| |
|
|
| T |
11562532 |
gtggcttcacggtaacaacctgcgtctgcgttgccagcaatgtaacacaacactt |
11562586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 254
Target Start/End: Complemental strand, 11546180 - 11545963
Alignment:
| Q |
37 |
taaaagttcatgtttcatatagtcttgttgtcaactgtgaccagacaaacattgccatctttaattaattctactaagttgaaaagattagggtggttca |
136 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
11546180 |
taaaagttcataattcatatggtcttgttgtcaactgtgaccggacaaaccttgccatctttaattaattctactaagttgaaaagattaaggtggtgca |
11546081 |
T |
|
| Q |
137 |
aaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcagcgtaacaacctgcatctgcgttgcctg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11546080 |
aaagacaaaaagctaaaaactctgcgagaaattccttgttccgttgaaatccatttctgtcaagtggcttcaccgtaacaacctgcgtctgcgttgcctg |
11545981 |
T |
|
| Q |
237 |
caatgtaacacagcactt |
254 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11545980 |
caatgtaacacagcactt |
11545963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 49
Target Start/End: Original strand, 1188217 - 1188264
Alignment:
| Q |
2 |
agtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgt |
49 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
1188217 |
agtaaaaggagaacaaagtaccaaatttgatatcctaaaagttcatgt |
1188264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 27472189 - 27472137
Alignment:
| Q |
2 |
agtaaaagcagaacaaagtaccaatattcatatcctaaaagttcatgtttcat |
54 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| | ||||||||||| |
|
|
| T |
27472189 |
agtaaaagcagaacaaagtaccaacatcaatatcctaacaaatcatgtttcat |
27472137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University