View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_23 (Length: 249)
Name: NF17750_low_23
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_23 |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 32746282 - 32746519
Alignment:
| Q |
12 |
attctccagagaagttgttattcgacaagtccagagtccttattgtttgcatttcaccaatggatgatggaaggattccctcaaaactatttttagatag |
111 |
Q |
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| T |
32746282 |
attctccagagaagttgttattcgacaagtccagagtctttattgtttgcatttcaccaatggatgatggaaggattccctcaaaactatttttagatag |
32746381 |
T |
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| Q |
112 |
gtttaaataattaagaattggaaatatcttacctatattctcttgtagttgactaccaatcttgttatttgaaatttgtaggtccaataaaccatgtttg |
211 |
Q |
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| T |
32746382 |
gtttacataattaagaattggaaatatcttacctatattctcttgtagttgactaccaatcttgttatttgaaatttgtaggtccaataaaccatgtttg |
32746481 |
T |
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| Q |
212 |
aaagttggaagctcaagagttcctgtgaatgagttgtt |
249 |
Q |
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| T |
32746482 |
aaagttggaagctcaagagttcctgtgaatgagttgtt |
32746519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 246
Target Start/End: Original strand, 4913276 - 4913508
Alignment:
| Q |
14 |
tctccagagaagttgttattcgacaagtccagagtccttattgtttgcatttcaccaatggatgatggaaggattccctcaaaactatttttagataggt |
113 |
Q |
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| T |
4913276 |
tctccagagaagttgttattggataagtccaaagtccttattgtttgcatttcaccaatggatgatggaagaattccctcaaaactattcttagataggt |
4913375 |
T |
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| Q |
114 |
ttaaataattaagaattggaaatatcttacctatattctcttgtagttgactaccaatcttgttatttgaaatttgtaggtccaataaaccatgtttgaa |
213 |
Q |
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| T |
4913376 |
ttacataataaagatttggaaatatcttacctatatcctcttgtagttgaccaccaatcttgttatttgaaatttgtaggtccaataaaccatgtttgaa |
4913475 |
T |
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| Q |
214 |
agttggaagctcaagagttcctgtgaatgagtt |
246 |
Q |
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| T |
4913476 |
agttggaagctcaagagttcctgtgaatgagtt |
4913508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 2126666 - 2126782
Alignment:
| Q |
133 |
aaatatcttacctatattctcttgtagttgactaccaatcttgttatttgaaatttgtaggtccaataaaccatgtttgaaagttggaagctcaagagtt |
232 |
Q |
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| T |
2126666 |
aaatacctcacctatatgctcttggagctgaccaccaattttgttgtttgaaatttgcaagtccaataatccatgtttgaaagttggaagctgaagagtt |
2126765 |
T |
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| Q |
233 |
cctgtgaatgagttgtt |
249 |
Q |
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| T |
2126766 |
cctgtgaatgagttgtt |
2126782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 2126573 - 2126645
Alignment:
| Q |
13 |
ttctccagagaagttgttattcgacaagtccagagtccttattgtttgcatttcaccaatggatgatggaagg |
85 |
Q |
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| T |
2126573 |
ttctccagagaagttgttatttgacaagtcaagagtccttattttttgcatttcaccaatggatgatggaagg |
2126645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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