View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_25 (Length: 238)
Name: NF17750_low_25
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_25 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 32746718 - 32746498
Alignment:
| Q |
18 |
atggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttttcctacttttttattgaatcagcat |
117 |
Q |
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| T |
32746718 |
atggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttttcctacttttttattgaatcagcat |
32746619 |
T |
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| Q |
118 |
gagctacagctacttgacctttctcataacaagctatcagggaattttccctcttggctcatagaaaataacacaaagttagagaccttgtatttgatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32746618 |
gagctacagctacttgacctttctcataacaagctatcagggaattttccctcttggctcatagaaaataacacaaagttagagaccttgtatttgatga |
32746519 |
T |
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| Q |
218 |
acaactcattcacaggaactc |
238 |
Q |
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||||||||||||||||||||| |
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| T |
32746518 |
acaactcattcacaggaactc |
32746498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 4913710 - 4913490
Alignment:
| Q |
18 |
atggcaccctacatttcaattaagagttctccaacttaaaaattgctttctaaattcaaggagaaatggaacttttcctacttttttattgaatcagcat |
117 |
Q |
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|||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||| || | |||||||| |
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| T |
4913710 |
atggcaccctacttttcaattaaaagttctccaacttagaaattgctttctaaattcaaagagagatggaacttttcctacttttctactttatcagcat |
4913611 |
T |
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| Q |
118 |
gagctacagctacttgacctttctcataacaagctatcagggaattttccctcttggctcatagaaaataacacaaagttagagaccttgtatttgatga |
217 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||| || ||||||| |
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| T |
4913610 |
gagctgcaactacttgacctttctcataacaagctatcagggaattttccctcttggatattggaaaataacacaaagttggagaccttatacttgatga |
4913511 |
T |
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| Q |
218 |
acaactcattcacaggaactc |
238 |
Q |
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| T |
4913510 |
ataactcattcacaggaactc |
4913490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 2126795 - 2126761
Alignment:
| Q |
204 |
cttgtatttgatgaacaactcattcacaggaactc |
238 |
Q |
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| T |
2126795 |
cttgtatttgatgaacaactcattcacaggaactc |
2126761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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