View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_26 (Length: 237)
Name: NF17750_low_26
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_26 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 221
Target Start/End: Original strand, 4753 - 4964
Alignment:
| Q |
12 |
taatactccaaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttggttata--catcataggaggaagagatttttactttaagttgt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
4753 |
taatattccaaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttagttatatacatcataggaggaagaaatttttactttaagttgt |
4852 |
T |
|
| Q |
110 |
taggaaatagtctacttaagttttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatgcaactttcaaata |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4853 |
taggaaatagtctacttaagttttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaactttcaaata |
4952 |
T |
|
| Q |
210 |
agaggttgaaca |
221 |
Q |
| |
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| |||||||||| |
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| T |
4953 |
ataggttgaaca |
4964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 2635256 - 2635045
Alignment:
| Q |
12 |
taatactccaaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttggttata--catcataggaggaagagatttttactttaagttgt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
2635256 |
taatattccaaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttagttatatacatcataggaggaagaaatttttactttaagttgt |
2635157 |
T |
|
| Q |
110 |
taggaaatagtctacttaagttttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatgcaactttcaaata |
209 |
Q |
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| T |
2635156 |
taggaaatagtctacttaagttttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaactttcaaata |
2635057 |
T |
|
| Q |
210 |
agaggttgaaca |
221 |
Q |
| |
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| |||||||||| |
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| T |
2635056 |
ataggttgaaca |
2635045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 21 - 221
Target Start/End: Complemental strand, 2593272 - 2593071
Alignment:
| Q |
21 |
aaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttggttatacatcataggaggaagagatttttactttaagttgttaggaaatagt |
120 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||||||| | ||||||||||||||| | |
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| T |
2593272 |
aaagtttgaggtatgaaaatcatttgaaacataattgataccaacttggttatatatcataggagtaagaaatttttacatcaagttgttaggaaatgtt |
2593173 |
T |
|
| Q |
121 |
ctactt-aagttttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatgcaactttcaaataagaggttgaa |
219 |
Q |
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|||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||| || |
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| T |
2593172 |
ctacttcaagttttctacatcgctagggaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatacaatttttaaataagaggttaaa |
2593073 |
T |
|
| Q |
220 |
ca |
221 |
Q |
| |
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|| |
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|
| T |
2593072 |
ca |
2593071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 215
Target Start/End: Original strand, 2568033 - 2568216
Alignment:
| Q |
32 |
tatgaaaatcatttgaaacataattgataca--aacttggttatacatcataggaggaagagatttttactttaagttgttaggaaatagtctactt-aa |
128 |
Q |
| |
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||||||||||||||| |||| |||||||| | ||||||||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||| || |
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| T |
2568033 |
tatgaaaatcatttgtaacagaattgatataccaacttggttat----cataggaggaagaaagttttacactaagttgttaggaaatattctacttcaa |
2568128 |
T |
|
| Q |
129 |
gtt-ttctacatcgataggtaatcaagtacatatgcattaaatcaaaattgacattaacaatattaatgcaactttcaaataagaggt |
215 |
Q |
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||| ||||||||| || ||||| ||||| |||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||||||| |
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| T |
2568129 |
gttgttctacatccattggtaaacaagtgcatatgcatttaatcaaaatcgacattaacaatattaatacaattctcaaataagaggt |
2568216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 2671455 - 2671511
Alignment:
| Q |
18 |
tccaaagtgtgaggtatgaaaatcatttgaaacataattgatacaaacttggttata |
74 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||| | |||||||||| |
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|
| T |
2671455 |
tccaaagagtgaggtatgaaaatcatttgaaatagaattgataacatcttggttata |
2671511 |
T |
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