View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_27 (Length: 233)
Name: NF17750_low_27
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 52102124 - 52102341
Alignment:
| Q |
1 |
aaataataaaaattctagaagtcactatttgaaaggggttcatgaacgtgatcagcaatgaagatattatcatagagaatggcagcagtagctgaaccaa |
100 |
Q |
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| T |
52102124 |
aaataataaaaattctagaagtcactatttgaaaggggttcatgaacgtgatcagcaatgaagatattattatagagaatggcagcagtagctgaaccaa |
52102223 |
T |
|
| Q |
101 |
tgaatgggccaacccaatagacccaatgatgagtccattttccactaacaacagcaggcccgaaagacacagctgggttcattgatgcaccatcaaaaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52102224 |
tgaatgggccaacccaatagacccaatgatgagtccatgttccactaacaacagcaggcccgaaagacacagctgggttcattgatgcaccatcaaaaac |
52102323 |
T |
|
| Q |
201 |
accaccaaccaagatatt |
218 |
Q |
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|||||||||||||||||| |
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| T |
52102324 |
accaccaaccaagatatt |
52102341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 45728 - 45657
Alignment:
| Q |
96 |
accaatgaatgggccaacccaatagacccaatgatgagtccattttccactaacaacagcaggcccgaaaga |
167 |
Q |
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| T |
45728 |
accaataagtggtccaacccaataaacccaatgatctgtccaatttccactaaccaaagcaggcccaaaaga |
45657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 7656990 - 7656785
Alignment:
| Q |
13 |
ttctagaagtcactatttgaaaggggttcatgaacgtgatcagcaatgaagatattatcatagagaatggcagcagtagctgaaccaatgaatgggccaa |
112 |
Q |
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| T |
7656990 |
ttctagaaatcactgtttgagaggggttcatgaccatcatcaccaatgaagatattatcatagataatagcagcaaatgctgcaccaataaatgggccga |
7656891 |
T |
|
| Q |
113 |
cccaatagacccaatgatgagtccattttccactaacaacagcaggcccgaaagacacagctgggttcattgatgcaccatcaaaaacaccaccaaccaa |
212 |
Q |
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|||||||||||||||||||||||||| | | |||||||||||||||||| || ||||||||||| ||||| |||||||||||||| | |||||| | || |
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| T |
7656890 |
cccaatagacccaatgatgagtccatgtccaactaacaacagcaggcccaaatgacacagctggattcatggatgcaccatcaaatgctccaccagctaa |
7656791 |
T |
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| Q |
213 |
gatatt |
218 |
Q |
| |
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|||||| |
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|
| T |
7656790 |
gatatt |
7656785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 41417970 - 41418010
Alignment:
| Q |
148 |
acaacagcaggcccgaaagacacagctgggttcattgatgc |
188 |
Q |
| |
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| T |
41417970 |
acaacagcaggcccgaatgacactgctgggttcatggatgc |
41418010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 8316097 - 8316231
Alignment:
| Q |
1 |
aaataataaaaattctagaagtcactatttgaaaggggttcatgaacgtgatcag---caatgaagatattatcatagagaatggcagcagtagctgaac |
97 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| | | |||| ||||||||||||||||| ||||||| |||| |||||| |
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| T |
8316097 |
aaataataaaaattctagaagtcactgtttgaaaggggttcatgagcatcatcataaccaatgaagatattatcaaagagaat------agtaactgaac |
8316190 |
T |
|
| Q |
98 |
caatgaatgggccaacccaatagacccaatgatgagtccat |
138 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8316191 |
caatgaatgggccaacccaatagacccaatgatgagtccat |
8316231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 23340529 - 23340405
Alignment:
| Q |
82 |
gcagcagtagctgaaccaatgaatgggccaacccaatagacccaatgatgagtccattttccactaacaacagcaggcccgaaagacacagctgggttca |
181 |
Q |
| |
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|||||| |||| ||||| || || ||||| ||||||||||||||||||| || |||| | | ||||||||||||||||| ||||| || |||||||||| |
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| T |
23340529 |
gcagcaatagcagaaccgatcaacgggccgacccaatagacccaatgattagcccatgtccagctaacaacagcaggcccaaaagaaactgctgggttca |
23340430 |
T |
|
| Q |
182 |
ttgatgcaccatcaaaaacaccacc |
206 |
Q |
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| |||||||||||||| ||||||| |
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| T |
23340429 |
tggatgcaccatcaaatgcaccacc |
23340405 |
T |
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