View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17750_low_3 (Length: 541)
Name: NF17750_low_3
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 252 - 525
Target Start/End: Complemental strand, 34084435 - 34084160
Alignment:
| Q |
252 |
gagatctagtgttctttgggattcgttactcttttagctgagatctgttcagtttttgaggttatttattgctaaatttggtggttaagcaaaattaacc |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34084435 |
gagatctagtgttctttgggattcgttactcttttagctgagatctgttcagtttttgaggttatttattgctaaatttggtggttaagcaagattaacc |
34084336 |
T |
|
| Q |
352 |
ggtt--actggaacgggttaaggttaaacttgttatagaagctgaaaacgttgtatcatggttcaagattggaacttgaatgaagggtagaagaaaaacg |
449 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34084335 |
ggttttactggaacgggttaaggttaaacttgttatagaagctgaaaacgttgtatcatggttcaagattggaacttgaatgaagggtagaagaaaaacg |
34084236 |
T |
|
| Q |
450 |
gttgtgttctatagtttgactgattttggttgaacattgaaatcggtgggaatcttcttgtattgtagttgattgt |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34084235 |
gttgtgttctatagtttgactgattttggttgaacattgaaatcggtgggaatcttcttgtattgtagttgattgt |
34084160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 34084674 - 34084521
Alignment:
| Q |
13 |
aaaatactaattaccctttactgaacaaaaacccgacccggttcttctcacnnnnnnnnnnnnnnnnnnnnnnnataaagaagttttcaagcacactgtt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34084674 |
aaaatactaattaccctttactgaacaaaaacccgacccggttcttctcacttttttatttctttcatttttttataaagaagttttcaagcacactgtt |
34084575 |
T |
|
| Q |
113 |
ttcttgtcccctcccttcaaaaacatctttggtcgttttctgttactaattact |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34084574 |
ttcttgtcccctcccttcaaaaacatctttggtcgttttctgttactagttact |
34084521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University