View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17750_low_5 (Length: 502)
Name: NF17750_low_5
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_5 |
 | |
|
| [»] scaffold0014 (4 HSPs) |
| | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
| [»] scaffold0051 (2 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
| [»] scaffold0429 (1 HSPs) |
| | |
|
| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0654 (1 HSPs) |
| | |
|
| [»] scaffold0652 (1 HSPs) |
| | |
|
| [»] scaffold0086 (1 HSPs) |
| | |
|
| [»] scaffold0110 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 484
Target Start/End: Original strand, 41316361 - 41316836
Alignment:
| Q |
9 |
gaagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagat |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316361 |
gaagaaaattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagat |
41316460 |
T |
|
| Q |
109 |
gtttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcag |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41316461 |
gtttttcaggatcttttgattaagggttatagtctaaatatccaaacgtataatatcatgatcaatggactttgtaaagaaggcttgtttgatgaagcag |
41316560 |
T |
|
| Q |
209 |
aggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316561 |
aggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaa |
41316660 |
T |
|
| Q |
309 |
ggcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgatttctctctctatagatgtaatatattcatcaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41316661 |
ggcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgatttctctctctatagatgtaatatattcagcaa |
41316760 |
T |
|
| Q |
409 |
ttgtaataactaatcactataaccgtgatttgcattaacttccccttgtagaggttcatttgtggaccagactcct |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316761 |
ttgtaataactaatcactataaccgtgatttgcattaacttccccttgtagaggttcatttgtggaccagactcct |
41316836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 17251415 - 17251635
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| ||||| ||||| | ||||||| |||| |||||||||| ||||||| | |||||| || ||||||| |||| || | | |
|
|
| T |
17251415 |
aagaaaattaaagatcaaggtattcaggcaaatatgtatacatacaatatacttgttgatggactttgcaaagatggtagacttacagatgctcagaagg |
17251514 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
||||||||||||||||||| || || ||| | || || | ||| |||| ||| ||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
17251515 |
tttttcaggatcttttgatgaaaggccataatgtagatgttgtaacatatagtattatgatcaatgggctttgtaaagagagcttgtttgatgaagcatt |
17251614 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatgga |
230 |
Q |
| |
|
| | ||| ||||||||||||| |
|
|
| T |
17251615 |
gaccttgctgtcaaaaatgga |
17251635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 41198884 - 41199018
Alignment:
| Q |
74 |
tatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatcttttgattaagggttatagtctaaata----tccgaacgtataatatcatga |
169 |
Q |
| |
|
||||||||| ||||||||||||||||| ||| | ||| |||||||||||||||||| || | | | ||| || || |||| |||||||| |||| |
|
|
| T |
41198884 |
tatgcaaataaggaagacttaagaatggacatcaaatttctcaggatcttttgattaaaggattcaatgtaattaatagtctgaacatataatattatga |
41198983 |
T |
|
| Q |
170 |
tcaatggactttgtaaagagggcttgtttgatgaa |
204 |
Q |
| |
|
|||| || |||||| ||||||||||||||||||| |
|
|
| T |
41198984 |
tcaacggtctttgtttagagggcttgtttgatgaa |
41199018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 15998646 - 15998610
Alignment:
| Q |
16 |
attaaagaccaaggcattcaatcggatatgtacacat |
52 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
15998646 |
attaaagaccaaggcattcaaccggatttgtacacat |
15998610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 381
Target Start/End: Original strand, 11991414 - 11991785
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| |||||||||||| | ||||||||||| | ||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
11991414 |
aagaaaattaaagatcaaggcattcaaccagatatgtacacgttcaatatacttatttatggattatgcaaagtaggacgacttaagaatgcacaagatg |
11991513 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11991514 |
ttttccaggatcttttgagtaagggttatagtgtaaatgcttggacgtataatattatggtcaatggactttgtaaagagggcttgtttgatgaagcaga |
11991613 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || | || |||||||||||||| |||||||||||| |
|
|
| T |
11991614 |
ggccttgttgtcaaaaatggatgacaatggtatcattcctgatgctgtaacttatgaaactctcatccaggctctctttcataaagatgagaatgaaaag |
11991713 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgatttctc |
381 |
Q |
| |
|
|| |||||||| | || |||||||||||||||| || ||| | | || |||||||||||||||||||| |
|
|
| T |
11991714 |
gcggagaaacttctgcgtgaaatgattgctagaggtctcctatgatggaaacactaggtaagatgatttctc |
11991785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 16351152 - 16351462
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| || ||||||||| | |||||| ||||| |||||||||||||||||| |||||||| ||||| ||| |||||||||||||||| |
|
|
| T |
16351152 |
aagaaaattaaagaacatggcattcaaccaaatatgtgcacatacaatatacttattgatggactatgcaaaggaggacaactcaagaatgcacaagatg |
16351251 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16351252 |
tttttcaggatcttttgattaagggttataacgtaaatgcttggacgtataatattatgatcaatggactttgtaaagaaggcttgtttgatgaagcaga |
16351351 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
|| ||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||| || | || |||||||||||||||||||| |||||| |
|
|
| T |
16351352 |
ggtcttgttgtcaaaaatggaggacaatggtatcattcctgatgctgtaacttatgaaactatcatccaggctctctttcataaagacgagaacgaaaag |
16351451 |
T |
|
| Q |
310 |
gcagagaaact |
320 |
Q |
| |
|
||| ||||||| |
|
|
| T |
16351452 |
gcacagaaact |
16351462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 33998186 - 33998301
Alignment:
| Q |
154 |
acgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatg |
253 |
Q |
| |
|
||||||||| | ||||| ||||| |||||||| |||| ||||||||||||||| || ||||| |||| |||||| ||| ||| | ||||||||||| |
|
|
| T |
33998186 |
acgtataatgttatgataaatgggctttgtaagaagggtttgtttgatgaagcacttgccttgttatcaagaatggaagacaatgcttgcattcctgatg |
33998285 |
T |
|
| Q |
254 |
ccgtaacttatgaaac |
269 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
33998286 |
ctgtaagttatgaaac |
33998301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 183; Significance: 9e-99; HSPs: 4)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 137476 - 137810
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
137476 |
aagaaaattaaagaccaaggcattcaaccaaatatgtacacatacaatatacttattgatgggttatgcaaaggaggacgacttaagaatgcacaagatg |
137575 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
||||||| ||||| || | |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
137576 |
tttttcaagatctattaactaagggttatagtctaaacatccgaacgtataatattttgatcaatggactttgtaaagagggcttgtttgataaagcaga |
137675 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
||| ||||||||||||||||| || ||| ||||| |||| ||| |||||||||||||||| ||| ||| | |||||| ||||||| | ||||||||| |
|
|
| T |
137676 |
ggccttgttgtcaaaaatggaggataatgatatcaatcctaatgttgtaacttatgaaactattatccgctctctcttttataaagattacaatgaaaag |
137775 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagagg |
344 |
Q |
| |
|
|| |||||||| |||| ||||| |||||||||| |
|
|
| T |
137776 |
gcggagaaacttcttcgtgaaatggttgctagagg |
137810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 104635 - 104325
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
104635 |
aagaaaattaaagaccaaggcattcaaccagatatgtacacatacaatatacttattgatgggttatgcaaaggaggacgacttaagaatgcacaagatg |
104536 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
||||||||||||| || | ||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
104535 |
tttttcaggatctattaactaagggttatagtctaaatatccgatcatataatattttgatcaatggactttgtaaagatggcttgtttgataaagcaga |
104436 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
||| ||||||||||||||| | | ||| | ||||||||||||| |||||||||||||||| ||| | | | |||||| ||||||| ||||||||||| |
|
|
| T |
104435 |
ggccttgttgtcaaaaatgaagggtaatgatgtcattcctgatgctgtaacttatgaaactattatccactctctcttttataaagatgagaatgaaaaa |
104336 |
T |
|
| Q |
310 |
gcagagaaact |
320 |
Q |
| |
|
|| |||||||| |
|
|
| T |
104335 |
gcggagaaact |
104325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 22 - 351
Target Start/End: Original strand, 140379 - 140703
Alignment:
| Q |
22 |
gaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatc |
121 |
Q |
| |
|
||||| ||||||||| | |||||||| |||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||| |||| |
|
|
| T |
140379 |
gaccagggcattcaaccagatatgtatacatacaatatacttattgatggactatgcaaaggaggacgacttaagaatgcacaagatatttttcaagatc |
140478 |
T |
|
| Q |
122 |
ttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtc |
221 |
Q |
| |
|
||||||||||||||||||||||| ||| | | |||||| ||| |||||||||||||||||||||| ||||||||||||| ||| || ||| |||| |
|
|
| T |
140479 |
ttttgattaagggttatagtctacatactcaa-----taatattatggtcaatggactttgtaaagaggggttgtttgatgaagtagatgccttgatgtc |
140573 |
T |
|
| Q |
222 |
aaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagagaaactc |
321 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||| ||||| || || || |||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
140574 |
taaaatggatgacaatggtatcattcctgatgctgtaacttatgtaactatcatccgggctctctttcataaagatgagaatgaacaggcggagaaactt |
140673 |
T |
|
| Q |
322 |
tttcggaaaatgattgctagaggcctacta |
351 |
Q |
| |
|
|||| |||||||||||||||| |||||| |
|
|
| T |
140674 |
cttcgtgaaatgattgctagaggtctacta |
140703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 121377 - 121067
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| || ||||||||| | |||| |||||| |||||||||||| ||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
121377 |
aagaaaattaaagatcagggcattcaacccaatattaacacatacaatatacttatcgatggactatgcaaagaaggaagacttgagaatgcacaagtga |
121278 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || |||| |||| | | || ||||||| ||||| ||||| |||||| ||||| ||||||||||||| |
|
|
| T |
121277 |
tttttcaggatcttttgattaaaggctataaggtaaaagtttggacatataatactatgattaatggtctttgtttggagggactgtttgatgaagctat |
121178 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| | | || ||||||||| ||| ||||| || |||||||| |||||||||||||||| |||| ||| || ||| | || || |||||||| ||| |
|
|
| T |
121177 |
gaccctactggaaaaaatggaagacaatggttgcactcctgatgttgtaacttatgaaactattatttacgctctttttaaaaatgatgagaatgataag |
121078 |
T |
|
| Q |
310 |
gcagagaaact |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
121077 |
gcagagaaact |
121067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 126020 - 125648
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| || ||||| |||||||||||| | ||||||| ||||| |||||||||||||||||| |||||||| ||||| ||||| | ||||||| ||||| |
|
|
| T |
126020 |
aagaaaatcaaagatcaaggcattcaaccagatatgtgcacatacaatatacttattgatggactatgcaaaggaggacgacttcataatgcacgagatg |
125921 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| || | | |||||||||||| |||||||||||||||||||||| ||| || ||||||||||| || |
|
|
| T |
125920 |
tttttcaagatcttttgatcaagggttatagtctagatgttcaaacgtataatattatgatcaatggactttgtaaagtgggtttatttgatgaagcgga |
125821 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
|| ||| ||||||||||||| ||| |||| || ||||||||||| |||||||||||||||| || || || ||||||||||||| |||||||||||| |
|
|
| T |
125820 |
ggtcttgctgtcaaaaatggaagacaatggcataattcctgatgctgtaacttatgaaactatcatccgggctttctttcataaagatgagaatgaaaag |
125721 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgatttctct |
382 |
Q |
| |
|
|| |||||||| |||| |||||||||||||||| ||||| ||| | || ||||||||||||||||||||| |
|
|
| T |
125720 |
gcggagaaacttcttcgtgaaatgattgctagaggtctacttaaatggaaacactaggtaagatgatttctct |
125648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 378 - 451
Target Start/End: Complemental strand, 120773 - 120700
Alignment:
| Q |
378 |
tctctctctatagatgtaatatattcatcaattgtaataactaatcactataaccgtgatttgcattaacttcc |
451 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
120773 |
tctctctctatagatgtaatatatcaatcaattgtaataagtaatcactataactgtgatttgcattaacttcc |
120700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 155; Significance: 5e-82; HSPs: 2)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 55 - 373
Target Start/End: Complemental strand, 47755 - 47437
Alignment:
| Q |
55 |
aatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatcttttgattaagggttatagtctaaatatccgaa |
154 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||| ||||| |||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
47755 |
aatatacttatcgatggactatgcaaaggaggacgacttcagaatgcatgagatgtttttcaagatcttatgattaaaggttatagtctaaatatccgaa |
47656 |
T |
|
| Q |
155 |
cgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgc |
254 |
Q |
| |
|
| |||| ||| ||||||||||||||||||||| | | || |||||||||| ||||| ||||||||||||||||| ||| ||||||| ||||| |||| |
|
|
| T |
47655 |
catatactattatgatcaatggactttgtaaaatgagtttatttgatgaagtggaggccttgttgtcaaaaatggaggacaatggtatacttcctaatgc |
47556 |
T |
|
| Q |
255 |
cgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagagaaactctttcggaaaatgattgctagaggcctactaaaa |
354 |
Q |
| |
|
|||||||||||||||| ||| || || ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| || |
|
|
| T |
47555 |
tgtaacttatgaaactattatccgggctctctttcataaagacttgaatgaaaaggcagagaaacttcttcggaaaatgattgctagaggtctacttgaa |
47456 |
T |
|
| Q |
355 |
gagtaatactaggtaagat |
373 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
47455 |
gagtaactctaggtaagat |
47437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 22 - 350
Target Start/End: Complemental strand, 43203 - 42875
Alignment:
| Q |
22 |
gaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatc |
121 |
Q |
| |
|
||||||||||||||| || |||||||||| |||||||||||||||||| ||||||| |||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
43203 |
gaccaaggcattcaactagacatgtacacatacaatatacttattgatggactatgcaagcaaggaaggcttaaggatgcacaagtgatttttcaggatc |
43104 |
T |
|
| Q |
122 |
ttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtc |
221 |
Q |
| |
|
|||||||||| || || | | ||| || | || |||| ||| ||||||||||| |||||| |||||| ||| | |||||||| ||||| || |||| |
|
|
| T |
43103 |
ttttgattaaaggctacaatttaacagtctggacatatactattatgatcaatggtctttgtttagagggtttgctcgatgaagctgaggccctgctgtc |
43004 |
T |
|
| Q |
222 |
aaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagagaaactc |
321 |
Q |
| |
|
||||||||| ||| |||| |||||||||| ||||||| |||||| | |||||| || |||||| | || || |||| |||| |||||||||||| |
|
|
| T |
43003 |
aaaaatggaagacaatggatgtgttcctgatgctgtaacttgtgaaacaattattcgtgctctctttgaaaatgataagaacgaaagggcagagaaacta |
42904 |
T |
|
| Q |
322 |
tttcggaaaatgattgctagaggcctact |
350 |
Q |
| |
|
| || ||||||||| |||||| ||||| |
|
|
| T |
42903 |
ctacgtgaaatgattgttagaggtctact |
42875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 320
Target Start/End: Original strand, 3643139 - 3643449
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||| ||||||||| | ||||||||||| |||||||||||||||||| | || ||| ||||| ||||||||||||||||||||| |
|
|
| T |
3643139 |
aagaaaattaaagaccagggcattcaaccaagtatgtacacatacaatatacttattgatggactctgtaaaggaggacgacttaagaatgcacaagatg |
3643238 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
3643239 |
ttttccaggatcttttgattaagggttatagtgtaaatgcttggacgtataatattatgatcaatggactttgtaaagaaggcttgtttaatgaagcaga |
3643338 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
|| |||||||| |||||||| || ||||||||||||||||||| ||||| |||||||||| || || || ||||||| |||||| ||||| |||||| |
|
|
| T |
3643339 |
ggtcttgttgtccaaaatggagaacaatggtatcattcctgatgctgtaacgtatgaaactatcatccgggctctctttcgtaaagatgagaacgaaaag |
3643438 |
T |
|
| Q |
310 |
gcagagaaact |
320 |
Q |
| |
|
|| |||||||| |
|
|
| T |
3643439 |
gcggagaaact |
3643449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 38144604 - 38144496
Alignment:
| Q |
23 |
accaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatct |
122 |
Q |
| |
|
||||||||||||| |||| ||||||||| | ||| ||||||||||| || | ||| | |||||||||||| |||||||| | ||||| ||||||| |
|
|
| T |
38144604 |
accaaggcattcaggtggatttgtacacatgtagtatgcttattgatggtttgtctaaagggggaagacttaaggatgcacaacaaatttttaaggatct |
38144505 |
T |
|
| Q |
123 |
tttgattaa |
131 |
Q |
| |
|
||||||||| |
|
|
| T |
38144504 |
tttgattaa |
38144496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 106 - 379
Target Start/End: Complemental strand, 33498110 - 33497837
Alignment:
| Q |
106 |
gatgtttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaag |
205 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| ||||||||| | ||||||||||| || ||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
33498110 |
gatgtttttcaggatcttttgaataaggtttatagcctaaatatctggacgtataatattataatcaacggactttgtaaagagtgcttatttgatgaag |
33498011 |
T |
|
| Q |
206 |
cagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatga |
305 |
Q |
| |
|
||||| | |||||||||||| || ||| ||| |||||||||| | ||||||||||||| | ||| || | |||||||||||||| |||||||| |
|
|
| T |
33498010 |
tagaggattagttgtcaaaaatagaggacaatgctatcattccttagagtgtaacttatgaaattgttatccggtctctctttcataaagatgagaatga |
33497911 |
T |
|
| Q |
306 |
aaaggcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgatttc |
379 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||||||| ||||| || |||| ||||||||||| ||||| |
|
|
| T |
33497910 |
gaagacagagaaacttcttcgcaaaatgattgctagaggtctacttcgagtgtaactctaggtaagataatttc |
33497837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 3335 - 3675
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||| |||||| |||||| ||||||||| |
|
|
| T |
3335 |
aagaaaattaaagaccaaggcattcaactagatatgtacacatacaatatacttatcgatggactatgcaaacaaggaaggcttaaggatgcacaagtga |
3434 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || || | | ||| || | || |||| ||| ||||||||||| |||||| |||||| ||| || ||||||| || |
|
|
| T |
3435 |
tttttcaggatcttttgattaaaggctacaatttaacagtctggacatatactattatgatcaatggtctttgtttagagggtttgcttaatgaagctga |
3534 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| | || ||||||||||||| ||| |||| |||||||||| ||||||| |||||| | ||||||||| |||||| | || || |||| |||| | |
|
|
| T |
3535 |
gaccctgctgtcaaaaatggaagacaatggatgtgttcctgatgctgtaacttgtgaaacaattattcgcgctctctttgaaaatgataagaacgaaagg |
3634 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagaggcctact |
350 |
Q |
| |
|
||||||||||| | || |||||||||| ||||| ||||| |
|
|
| T |
3635 |
gcagagaaactactacgtgaaatgattgccagaggtctact |
3675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 344
Target Start/End: Complemental strand, 15727086 - 15726752
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| || |||||||| ||||||||||| |||||||| |||| | ||||||||| ||||| |||||||| ||||||||||||| ||||||||| |
|
|
| T |
15727086 |
aagaaaatcaaagaccagggcattcaatcagatatgtatacatatagtatacttatcgatggactatgcaaacaaggaagacttaaggatgcacaagtga |
15726987 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
||||||| |||||||||||||| || |||| | ||||| | | || |||| ||| ||||||||||| |||||| | ||||||| ||||||||||| |
|
|
| T |
15726986 |
tttttcaagatcttttgattaaaggctataatttaaatgtttgcacatatagtattatgatcaatggtctttgttcaaagggcttatttgatgaagctac |
15726887 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| | || ||||||||||||| ||| ||||| |||||| ||||| |||||||||||| | | || || || |||||| | || || |||||||| ||| |
|
|
| T |
15726886 |
gaccctgctgtcaaaaatggaagacaatggttgcattccagatgctgtaacttatgaaccaattaaccgtgctctctttaaaaatgatgagaatgataag |
15726787 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagagg |
344 |
Q |
| |
|
|||||| |||| | || |||||||||||||||| |
|
|
| T |
15726786 |
gcagagcaacttctacgtgaaatgattgctagagg |
15726752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 16702045 - 16701742
Alignment:
| Q |
17 |
ttaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttca |
116 |
Q |
| |
|
|||||||||||||||||||| | |||||| |||||| |||| |||| ||||||| |||||||| ||||||||||||| | || ||| ||||||| |
|
|
| T |
16702045 |
ttaaagaccaaggcattcaaccagatatgcacacatataatacacttgttgatggactatgcaaacaaggaagacttaaggacgcgcaactgatttttca |
16701946 |
T |
|
| Q |
117 |
ggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttg |
216 |
Q |
| |
|
|||||||||||||| || || | | || | | | || |||||||| ||||||||||| |||||| |||||||||| |||||||||| ||| | ||| |
|
|
| T |
16701945 |
agatcttttgattaaaggctacaatttaccaacctggacatataatattatgatcaatggtctttgtttagagggcttgcttgatgaagctgagaccttg |
16701846 |
T |
|
| Q |
217 |
ttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagaga |
316 |
Q |
| |
|
||||||||||||| ||| |||| ||| ||||||| ||||||||| |||| | ||||| ||| || ||| | || || |||||||| || ||||||| |
|
|
| T |
16701845 |
ctgtcaaaaatggaagacaatggatgcatacctgatgttgtaacttatcaaaccattattcacgctctatttgaaaaggatgagaatgataaagcagaga |
16701746 |
T |
|
| Q |
317 |
aact |
320 |
Q |
| |
|
|||| |
|
|
| T |
16701745 |
aact |
16701742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 270
Target Start/End: Original strand, 24934816 - 24935029
Alignment:
| Q |
57 |
tatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatcttttgattaagggttatagtctaaatatccgaacg |
156 |
Q |
| |
|
||||||| ||||||| |||||||| |||||||||||| ||||||||| |||| |||||||||| | |||||||| ||| | || || | || | |
|
|
| T |
24934816 |
tatacttgttgatggactatgcaaaaatggaagacttaaggatgcacaagcggtttatcaggatcttcttattaagggctatcatttagatgttaaaatg |
24934915 |
T |
|
| Q |
157 |
tataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccg |
256 |
Q |
| |
|
|||||| | ||| ||||||| |||||||||||||||||||||||||||||| | | || ||||||||||||| ||| | ||| ||| |||||||| | |
|
|
| T |
24934916 |
tataatgtgatggtcaatgggctttgtaaagagggcttgtttgatgaagcactgtccttagtgtcaaaaatggaagacaacggttgcatacctgatgctg |
24935015 |
T |
|
| Q |
257 |
taacttatgaaact |
270 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24935016 |
taacttatgaaact |
24935029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 166 - 320
Target Start/End: Complemental strand, 15714733 - 15714579
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatg |
265 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||||||||||||| | | || ||||||||||||| ||| ||||| |||||| ||||| |||||||||| |
|
|
| T |
15714733 |
atgatcaatggtctttgtttagagggcttatttgatgaagcagtgaccctgctgtcaaaaatggaagacaatggttgcattccagatgctgtaacttatg |
15714634 |
T |
|
| Q |
266 |
aaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagagaaact |
320 |
Q |
| |
|
|||| | ||| || || |||||| | || || |||||||| |||||||||||||| |
|
|
| T |
15714633 |
aaacaattatccgtgctctctttaaaaatgatgagaatgataaggcagagaaact |
15714579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 207
Target Start/End: Original strand, 24898209 - 24898376
Alignment:
| Q |
40 |
gatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatcttttgattaagggttata |
139 |
Q |
| |
|
||||||| ||||| || || ||| ||||||| |||||||| |||||||||||| |||||||||| |||| || ||||||| || ||||||| ||| |
|
|
| T |
24898209 |
gatatgttcacatacacaatgcttgttgatggactatgcaaaaatggaagacttaaggatgcacaagaggtttatcgggatcttatggttaagggctatc |
24898308 |
T |
|
| Q |
140 |
gtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagca |
207 |
Q |
| |
|
| | ||| | | | ||||| ||||||| ||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
24898309 |
attttaatgcttgcatgcataatgtcatgattaatgggctttgtaaagagggcttgtttgacgaagca |
24898376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 268
Target Start/End: Original strand, 29894811 - 29894913
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatg |
265 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| | | ||||||||||||||| | ||| || || |||||| ||||| |||||||||| |
|
|
| T |
29894811 |
atgatccatgggttttgtaacaagggcttgtttgatgaagcattgactttgttgtcaaaaatgaaagacaatagttgcattccagatgctgtaacttatg |
29894910 |
T |
|
| Q |
266 |
aaa |
268 |
Q |
| |
|
||| |
|
|
| T |
29894911 |
aaa |
29894913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 205
Target Start/End: Original strand, 30029504 - 30029645
Alignment:
| Q |
64 |
attgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggat-cttttgattaagggttatagtctaaatatccgaacgtataat |
162 |
Q |
| |
|
|||||||| || |||||| | ||||| ||||||||||| | ||| ||||| |||||| ||| | ||||| |||||| |||| || || ||||||| | |
|
|
| T |
30029504 |
attgatggattgtgcaaaggcggaaggcttaagaatgcgctagaggtttt-caggatacttctaattaaaggttatcatctagatgtcttgacgtatact |
30029602 |
T |
|
| Q |
163 |
atcatgatcaatggactttgtaaagagggcttgtttgatgaag |
205 |
Q |
| |
|
| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
30029603 |
gttatgatcagtggcctttgtaaagagggcttgtttgatgaag |
30029645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 49 - 134
Target Start/End: Complemental strand, 30577626 - 30577541
Alignment:
| Q |
49 |
acatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatcttttgattaaggg |
134 |
Q |
| |
|
|||| |||||||||| ||||||| | |||||| |||||||||||| |||||||||| ||||||| |||||| |||||||||| |
|
|
| T |
30577626 |
acatacaatatacttgttgatggactgtgcaaaaatggaagacttaaggatgcacaagagatttttcatgatcttctgattaaggg |
30577541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 373
Target Start/End: Original strand, 29866907 - 29867114
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatg |
265 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| | ||| || || | |||| ||||| ||||||||| |
|
|
| T |
29866907 |
atgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatgaaagacaatagttgctttccaaatgccttaacttatg |
29867006 |
T |
|
| Q |
266 |
aaactaat-attcgcgcactctttcataaagacgagaatgaaaaggcagagaaactctttcggaaaatgattgctagaggcctactaaaagagtaatact |
364 |
Q |
| |
|
||| |||| || || | || ||| ||||||| || ||||| ||||| |||||||| |||| |||||||| | ||||||||| | |||| | | ||| |
|
|
| T |
29867007 |
aaa-taatcatccgttctctgtttgataaagatgaaaatgataaggcggagaaacttcttcgtgaaatgattacgagaggcctattgtaagactgaaact |
29867105 |
T |
|
| Q |
365 |
aggtaagat |
373 |
Q |
| |
|
||||||||| |
|
|
| T |
29867106 |
aggtaagat |
29867114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 125
Target Start/End: Complemental strand, 29348479 - 29348380
Alignment:
| Q |
26 |
aaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcaggatctttt |
125 |
Q |
| |
|
|||| |||||| | ||||||||||||| || ||| ||||||||||| || || ||| | |||||||| ||| ||||||| || ||||| |||||||||| |
|
|
| T |
29348479 |
aaggaattcaaccagatatgtacacatacactattcttattgatggattgtgtaaaggtggaagactaaaggatgcacagaatatttttgaggatctttt |
29348380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 29949785 - 29949666
Alignment:
| Q |
19 |
aaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcagg |
118 |
Q |
| |
|
||||||||||| ||||| | ||||||| |||| || ||||||| ||||||| |||||||| ||||||||| || |||||||||| ||| ||| | |
|
|
| T |
29949785 |
aaagaccaaggaattcagccaaatatgtatacatacactatacttgttgatggactatgcaaaaatggaagacttgaggatgcacaagagatttatcatg |
29949686 |
T |
|
| Q |
119 |
atcttttgattaagggttat |
138 |
Q |
| |
|
||||| ||| |||||||||| |
|
|
| T |
29949685 |
atcttctgactaagggttat |
29949666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 24271705 - 24271603
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatg |
265 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| | | ||||||||||||||| | ||| || || |||||| |||| |||||||||| |
|
|
| T |
24271705 |
atgatccatgggttttgtaacaagggcttgtttgatgaagcaatgactttgttgtcaaaaatgaaagacaattgttgcattccaaatgctgtaacttatg |
24271606 |
T |
|
| Q |
266 |
aaa |
268 |
Q |
| |
|
||| |
|
|
| T |
24271605 |
aaa |
24271603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 29835473 - 29835535
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatg |
228 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
29835473 |
atgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatg |
29835535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Original strand, 29887555 - 29887617
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatg |
228 |
Q |
| |
|
|||||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
29887555 |
atgatccatgggttttgtaacaagggcttgtttgatgaagcattggctttgttgtcaaaaatg |
29887617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 15712639 - 15712562
Alignment:
| Q |
375 |
atttctctctctatagatgtaatatattcatcaattgtaataactaatcactataaccgtgatttgcattaacttccc |
452 |
Q |
| |
|
|||||||||| ||| | ||||||| |||| |||| |||||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
15712639 |
atttctctctgtatcgtagtaatatgttcagcaatgttaataactaatccctataattgtggtttgcattaacttccc |
15712562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 24739083 - 24738971
Alignment:
| Q |
19 |
aaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcagg |
118 |
Q |
| |
|
||||||||||| ||||| ||||||| || |||| || |||||| ||||||| ||||||||| |||||||| ||| | || ||||| |||| |||| |
|
|
| T |
24739083 |
aaagaccaaggaattcagccggatatatatacatacacaatacttgttgatggtttatgcaaaaatggaagactcaaggacgcgcaagaggtttatcaga |
24738984 |
T |
|
| Q |
119 |
atcttttgattaa |
131 |
Q |
| |
|
|||||||||||| |
|
|
| T |
24738983 |
ttcttttgattaa |
24738971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 29953591 - 29953463
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| || ||||||||||| ||||| | ||||||| |||| || ||||||| |||||||| |||||||| ||||||||| | |||||| ||| |
|
|
| T |
29953591 |
aagaagatgaaagaccaagggattcagccaaatatgtatacatacactatacttgttgatgggctatgcaaaaatggaagacttgcggatgcacgagaga |
29953492 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttat |
138 |
Q |
| |
|
||| ||| |||||| ||| |||||||||| |
|
|
| T |
29953491 |
tttatcatgatcttctgactaagggttat |
29953463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 329 - 380
Target Start/End: Original strand, 30149948 - 30150000
Alignment:
| Q |
329 |
aaatgattgctagaggcctacta-aaagagtaatactaggtaagatgatttct |
380 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
30149948 |
aaatgattgctagaggtctactctaaagagtaaaactaggtaagatgttttct |
30150000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 9104 - 9465
Alignment:
| Q |
17 |
ttaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttca |
116 |
Q |
| |
|
||||||||| || ||||||| | |||||||||||| |||||||||||| ||||| |||||||| ||||||||||||| | ||||||| ||||||| |
|
|
| T |
9104 |
ttaaagaccgagacattcaaccaaatatgtacacatacaatatacttatcgatggactatgcaaacaaggaagacttaaggacgcacaagtgatttttca |
9203 |
T |
|
| Q |
117 |
ggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttg |
216 |
Q |
| |
|
|||||||| ||||| || || | | ||| | | || |||||||| ||||||||||| |||||| |||||||||| |||||||||| ||| || |
|
|
| T |
9204 |
agatcttttcattaaaggctacaatttaacagtatggacatataatattatgatcaatggtctttgtttagagggcttgcttgatgaagctttggctctg |
9303 |
T |
|
| Q |
217 |
ttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagaga |
316 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||| |||| ||||||| |||| | | | | ||| |||||| | || || ||||| ||||||||||||| |
|
|
| T |
9304 |
ttgtcaaaaatggaagacaatggttgcattcctaatgctgtaactttcgaaataattgtccacgctctctttaaaaatgatgagaacgaaaaggcagaga |
9403 |
T |
|
| Q |
317 |
aactctttcggaaaatgattgctagaggcctactaaaagagtaatactaggtaagatgattt |
378 |
Q |
| |
|
|||| | || |||||||||||||||| |||||| ||| | |||||| ||||||||||| |
|
|
| T |
9404 |
aacttctacgtgaaatgattgctagaggtctactataaggaaagtactagttaagatgattt |
9465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0429 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0429
Description:
Target: scaffold0429; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 6298 - 6638
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||| |||||||||||| ||||| |||||||| |||||| |||||| ||||||||| |
|
|
| T |
6298 |
aagaaaattaaagaccaaggcattcaactaaatatgtacacatacaatatacttatcgatggactatgcaaacaaggaaggcttaaggatgcacaagtga |
6397 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || || | | ||| || | || |||| ||| |||||||| || ||||| |||||| ||| || ||||||| || |
|
|
| T |
6398 |
tttttcaggatcttttgattaaaggctacaatttaacagtctggacatatactattatgatcaaaggtctttgattagagggtttgcttaatgaagctga |
6497 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| | || ||||||||||||| ||| |||| |||||||||| ||||||| |||||| | ||||||||| |||||| | || || |||| |||| | |
|
|
| T |
6498 |
gaccctgctgtcaaaaatggaagacaatggatgtgttcctgatgctgtaacttgtgaaacaattattcgcgctctctttgaaaatgataagaacgaaagg |
6597 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagaggcctact |
350 |
Q |
| |
|
||||||||||| | || |||||||||||||||| ||||| |
|
|
| T |
6598 |
gcagagaaactactacgtgaaatgattgctagaggtctact |
6638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 27455 - 27789
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||| |||| | |||||||||||| ||||| |||||||| ||||||| || |||||||||||| |
|
|
| T |
27455 |
aagaaaattaaagaccaaggcattcaaccaaatattaacacgtacaatatacttatcgatggactatgcaaagaaggaagatttgagaatgcacaagtga |
27554 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| || | || |||||||| ||||| ||||| |||||| ||||| |||||||||||||| |
|
|
| T |
27555 |
tttttcaggatcttttgattaaaggctataaggtaacagtctggacatataatattatgattaatggtctttgtttggagggattgtttgatgaagctat |
27654 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| | | || ||||||||| || ||||| || |||||||| |||||||||||||||| ||||||||| || ||| | || || ||||| | || |
|
|
| T |
27655 |
gaccctactggaaaaaatggaagataatggttgcactcctgatgttgtaacttatgaaactattattcgcgctctttttaaaaatgatgagaaccataaa |
27754 |
T |
|
| Q |
310 |
gcagagaaactctttcggaaaatgattgctagagg |
344 |
Q |
| |
|
||||||||||| | || |||||||||||||||| |
|
|
| T |
27755 |
gcagagaaacttctacgtgaaatgattgctagagg |
27789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0654 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0654
Description:
Target: scaffold0654; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 320
Target Start/End: Complemental strand, 1117 - 807
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| || ||||||||| | |||| |||||| |||||||||||| ||||| | |||||| || ||||||| |||||||||||| |
|
|
| T |
1117 |
aagaaaattaaagatcatggcattcaaccttatattaacacatacaatatacttatcgatggactttgcaaagaagtaagacttgagaatgcacaagtga |
1018 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagcaga |
209 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||| || | || |||||||| ||||| ||||| |||||| ||||| ||||||||| |||| |
|
|
| T |
1017 |
tttttcaggatcttttgattaaaggctataaggtaacggtctggacatataatattatgattaatggcctttgtttggagggattgtttgatcaagctat |
918 |
T |
|
| Q |
210 |
ggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatgaaactaatattcgcgcactctttcataaagacgagaatgaaaag |
309 |
Q |
| |
|
| || || ||||||||| || ||||| ||||||||||| ||||| |||||||||| ||||||||| || ||| | || || |||||||| | | |
|
|
| T |
917 |
gatcctgctggaaaaaatggaagaaaatggttgcattcctgatgttgtaacgtatgaaactattattcgcgctctttttaaaaatgatgagaatgatagg |
818 |
T |
|
| Q |
310 |
gcagagaaact |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
817 |
gcagagaaact |
807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0652 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0652
Description:
Target: scaffold0652; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 1192 - 1071
Alignment:
| Q |
10 |
aagaatattaaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatg |
109 |
Q |
| |
|
||||| |||||||| || ||||||||| | |||| |||||| || ||||||||| ||||| |||||||| |||||||||| |||||||||||| |
|
|
| T |
1192 |
aagaaaattaaagatcagggcattcaacccaatattaacacatacagtatacttatcgatggactatgcaaagaaggaagacttgagaatgcacaagtga |
1093 |
T |
|
| Q |
110 |
tttttcaggatcttttgattaa |
131 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1092 |
tttttcaggatcttttgattaa |
1071 |
T |
|
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Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 31207 - 31020
Alignment:
| Q |
19 |
aaagaccaaggcattcaatcggatatgtacacatccaatatacttattgatgggttatgcaaatgaggaagacttaagaatgcacaagatgtttttcagg |
118 |
Q |
| |
|
|||| ||||||||||||| | ||||| | | || ||||| |||||||||||| ||||||||| | |||| |||||| | |||||| ||||||||| |
|
|
| T |
31207 |
aaagtccaaggcattcaaccagatatacagatattcaatacacttattgatggattatgcaaacaaagaaggcttaaggacgcacaactgatttttcagg |
31108 |
T |
|
| Q |
119 |
atcttttgattaagggttatagtctaaatatccgaacgtataatatcatgatcaatggactttgtaaagagggcttgtttgatgaagc |
206 |
Q |
| |
|
||||||||| ||| || || | | ||| | | | || |||||||| || |||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
31107 |
atcttttgactaaaggctacaatgtaacaacctggacatataatattattatcaatggtctttgtttagagggcttatttgatgaagc |
31020 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 380
Target Start/End: Complemental strand, 43610 - 43395
Alignment:
| Q |
166 |
atgatcaatggactttgtaaagagggcttgtttgatgaagcagaggcgttgttgtcaaaaatggatgactatggtatcattcctgatgccgtaacttatg |
265 |
Q |
| |
|
||||| ||||| ||||||||||| || || |||||||||||| | | || | ||||||||||| ||| | ||| || |||||||| |||||||||| |
|
|
| T |
43610 |
atgattaatgggctttgtaaagaagggttttttgatgaagcattgtccttactctcaaaaatggaagacaacggttgcactcctgatggtgtaacttatg |
43511 |
T |
|
| Q |
266 |
aaactaatattcgcgcactctttcataaagacgagaatgaaaaggcagagaaactctttcggaaaatgattgctagaggcctacta-aaagagtaatact |
364 |
Q |
| |
|
||| || |||||| || | ||| | || || ||||| ||||| | |||||| |||| |||||||||||||||| ||||| ||||||||| ||| |
|
|
| T |
43510 |
aaattattattcgtgctttgtttgaaaacaacagaaatgataaggcggtgaaactgattcgtgaaatgattgctagaggtctactctaaagagtaaaact |
43411 |
T |
|
| Q |
365 |
aggtaagatgatttct |
380 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
43410 |
aggtaagatgttttct |
43395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 44262330 - 44262297
Alignment:
| Q |
170 |
tcaatggactttgtaaagagggcttgtttgatga |
203 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
|
|
| T |
44262330 |
tcaatgggctttgtaaagagggcttgtttgatga |
44262297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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