View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17750_low_6 (Length: 452)
Name: NF17750_low_6
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17750_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 432
Target Start/End: Complemental strand, 36509623 - 36509203
Alignment:
| Q |
11 |
gatgaaccaattaaatggtactcgtggtcaatggcatgtctcccagatccacaattctctgaagaacggattgagctcacaaagcctctatccctaattt |
110 |
Q |
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| T |
36509623 |
gatgaaccaattaaatggtactcgtggtcaatggcatgtctcccagatccacaattctctgaagaacggattgagctcacaaagcctctatccctaattt |
36509524 |
T |
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| Q |
111 |
acatcattgatgatatatttgatttttatggaaacattgatgaacttactctctttacagatgctgttaagaggtaattatgtgaatcctcactcaaata |
210 |
Q |
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| T |
36509523 |
acatcattgatgatatatttgatttttatggaaacattgatgaacttactctctttacagatgctgttaagaggtaattatgtgaatcctcactcaaata |
36509424 |
T |
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| Q |
211 |
aaattaaaccatactagtaannnnnnncttaagtattcttttgtttgaactcagatgggacttgtcagctattgaacaattaccagactgcatgaaagtg |
310 |
Q |
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| T |
36509423 |
aaattaaaccatactagtaatttttttcttaagtattcttttgtttgaactcagatgggacttgtcagctattgaacaattaccagactgcatgaaagtg |
36509324 |
T |
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| Q |
311 |
tgtttcaaggctctttatgacataactaatgaatttgctcttaggacatacatcaaacatggatggaatcctttaacctcattaataaaatcggtatacc |
410 |
Q |
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| T |
36509323 |
tgtttcaaggctctttatgacataactaatgaatttgctcttaggacatacatcaaacatggatggaatcctttaacctcattaataaaatcggtatacc |
36509224 |
T |
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| Q |
411 |
cttcattctaaatcttcagtag |
432 |
Q |
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| T |
36509223 |
ctt-attctaaatcttcagtag |
36509203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 37337401 - 37337331
Alignment:
| Q |
114 |
tcattgatgatatatttgatttttatggaaacattgatga-------acttactctctttacagatgctgt |
177 |
Q |
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| T |
37337401 |
tcattgacgatatatttgatttgtatggaaacattgatgattgatgaacttactctctttacagatgctgt |
37337331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 36523656 - 36523536
Alignment:
| Q |
21 |
ttaaatggtactcgtggtcaatggcatgtctcccagatccacaattctctgaagaacggattgagctcacaaagcctctatccctaatttacatcattga |
120 |
Q |
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| T |
36523656 |
ttaaatggtacatgtggtcattggcatgcctcacggatcctactttatctgaggaaagaattgagctcacaaaaccaatatctttaatttacataattga |
36523557 |
T |
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| Q |
121 |
tgatatatttgatttttatgg |
141 |
Q |
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| T |
36523556 |
tgacatttttgatatttatgg |
36523536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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