View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17750_low_7 (Length: 434)

Name: NF17750_low_7
Description: NF17750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17750_low_7
NF17750_low_7
[»] chr1 (7 HSPs)
chr1 (17-418)||(46827632-46828033)
chr1 (280-418)||(46820922-46821060)
chr1 (14-118)||(46820732-46820836)
chr1 (242-362)||(46821510-46821634)
chr1 (277-321)||(7463463-7463507)
chr1 (277-321)||(11426901-11426945)
chr1 (277-321)||(14924722-14924766)
[»] chr8 (3 HSPs)
chr8 (254-323)||(9484290-9484359)
chr8 (241-323)||(36732-36814)
chr8 (241-298)||(2601210-2601267)
[»] chr2 (3 HSPs)
chr2 (283-343)||(45546393-45546453)
chr2 (259-321)||(36718978-36719040)
chr2 (254-362)||(45548035-45548142)
[»] chr4 (1 HSPs)
chr4 (281-321)||(39112307-39112347)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Original strand, 46827632 - 46828033
Alignment:
Q  17 tcgacgacatcatttcctttctcccgttcttcctgccaacgccgaaacaacttcttgtcgtcgtttatccctggagaaactcatggttgacggtagtgaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46827632 tcgacgacatcatttcctttctcccgttcttcctgccaacgccgaaacaacttcttgtcgtcgtttatccctggagaagctcatggttgacggtagtgaa 46827731  T
Q  117 taatatttgacggtgttgttgttttcactgttgtcatttttgttgtttccggtaaggccatgttggagaagttgttttctcccgtgttcggcctttcttt 216  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46827732 taatatttgacggtgttgttgttttcactgtcgtcatttttgttgtttccggtaaggccatgttggagaagttgttttctcccgtgttctgcctttcttt 46827831  T
Q  217 gatttcacagagggttgaatttaccatgggaaatgtgaaaactttcctaccatataaaaactaattttaaccattaaattaaataaagaacacattttta 316  Q
    | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  46827832 gttttcacatagggttgaatttaccatgggaaaggtgaaaactttcctaccatagaaaaactaattttaaccattagattaaataaagaacacattttta 46827931  T
Q  317 tcatacatccacaccacaagatttgttgccataccttcttccaccaacatcgttttctcaatttatgtagcactgtaagttagctttttcataccttctt 416  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46827932 tcatacatccacaccacaagatttgtttccataccttctttcaccaacatcgttttctcaatttatgtagcactgtaagttagctttttcataccttctt 46828031  T
Q  417 cc 418  Q
    ||    
T  46828032 cc 46828033  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 280 - 418
Target Start/End: Original strand, 46820922 - 46821060
Alignment:
Q  280 attttaaccattaaattaaataaagaacacatttttatcatacatccacaccacaagatttgttgccataccttcttccaccaacatcgttttctcaatt 379  Q
    |||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||||||||| || | || ||||||||||||  |||| |||||||||||    
T  46820922 attttaactattagattaaataaagaacacacttttatcgtacatccacaccacaagatttttttcaatgccttcttccaccgtcatcattttctcaatt 46821021  T
Q  380 tatgtagcactgtaagttagctttttcataccttcttcc 418  Q
    ||||||||| ||||| |||| ||||||||||||||||||    
T  46821022 tatgtagcattgtaacttagttttttcataccttcttcc 46821060  T

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Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 46820732 - 46820836
Alignment:
Q  14 ttctcgacgacatcatttcctttctcccgttcttcctgccaacgccgaaacaacttcttgtcgtcgtttatccctggagaaactcatggttgacggtagt 113  Q
    ||||||||| |||  ||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||| ||||| |||||||||||| |||||    
T  46820732 ttctcgacggcattgtttcctttctcccgttcttcctgtcaacaccgaaccaatttcttgtcgtcgtttatccctagagaagctcatggttgacagtagt 46820831  T
Q  114 gaata 118  Q
    |||||    
T  46820832 gaata 46820836  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 362
Target Start/End: Complemental strand, 46821634 - 46821510
Alignment:
Q  242 atgggaaatgtgaaaactttcctaccatataaaaactaattttaaccattaaattaaataaagaacacatttttatcatacatccacaccacaagatttg 341  Q
    |||| ||| ||||||||||||  | |||| |||| ||||||||||| ||||||||||||||| |||||| |||||||||||||| | ||||| ||||||     
T  46821634 atggtaaaggtgaaaactttctcatcataaaaaagctaattttaactattaaattaaataaaaaacacacttttatcatacatctataccactagatttt 46821535  T
Q  342 ttg----ccataccttcttccacca 362  Q
    ||     ||||||||||||||||||    
T  46821534 tttttttccataccttcttccacca 46821510  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 7463463 - 7463507
Alignment:
Q  277 ctaattttaaccattaaattaaataaagaacacatttttatcata 321  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||    
T  7463463 ctaattttgaccattagattaaataaagaacacagttttatcata 7463507  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 11426901 - 11426945
Alignment:
Q  277 ctaattttaaccattaaattaaataaagaacacatttttatcata 321  Q
    |||||||| ||||||| ||||| ||||||||||| ||||||||||    
T  11426901 ctaattttgaccattagattaactaaagaacacagttttatcata 11426945  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 14924722 - 14924766
Alignment:
Q  277 ctaattttaaccattaaattaaataaagaacacatttttatcata 321  Q
    |||||||| ||| |||||||||||| |||||| ||||||||||||    
T  14924722 ctaattttgaccgttaaattaaatagagaacatatttttatcata 14924766  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 9484290 - 9484359
Alignment:
Q  254 aaaactttcctaccatataaaaactaattttaaccattaaattaaataaagaacacatttttatcataca 323  Q
    ||||| |||| |||||| ||||| | | ||||||||||||||||||| ||||||||| ||||||||||||    
T  9484290 aaaacattcccaccataaaaaaatttactttaaccattaaattaaatgaagaacacagttttatcataca 9484359  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 36814 - 36732
Alignment:
Q  241 catgggaaatgtgaaaactttcctaccatataaaaactaattttaaccattaaattaaataaagaacacatttttatcataca 323  Q
    |||||| |||||||||||||||| ||||||  |||| | |||||| |||||  ||||| | || |||||| ||||||||||||    
T  36814 catggggaatgtgaaaactttcccaccataggaaaaatgattttagccattggattaattgaataacacaattttatcataca 36732  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 2601267 - 2601210
Alignment:
Q  241 catgggaaatgtgaaaactttcctaccatataaaaactaattttaaccattaaattaa 298  Q
    ||||||||| ||||||||||||| |||||| ||||| |  |||||||||||| |||||    
T  2601267 catgggaaaagtgaaaactttcccaccatagaaaaaatgtttttaaccattagattaa 2601210  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 343
Target Start/End: Original strand, 45546393 - 45546453
Alignment:
Q  283 ttaaccattaaattaaataaagaacacatttttatcatacatccacaccacaagatttgtt 343  Q
    ||||| ||| ||||||||| ||||||||||||||||||||| ||||| ||| |||||||||    
T  45546393 ttaactatttaattaaatagagaacacatttttatcatacacccacaacactagatttgtt 45546453  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 36719040 - 36718978
Alignment:
Q  259 tttcctaccatataaaaactaattttaaccattaaattaaataaagaacacatttttatcata 321  Q
    ||||||||||||  ||| ||||||||||||||||||||||||||  |||| | ||||||||||    
T  36719040 tttcctaccataggaaagctaattttaaccattaaattaaataagaaacatacttttatcata 36718978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 362
Target Start/End: Complemental strand, 45548142 - 45548035
Alignment:
Q  254 aaaactttcctaccatataaaaactaattttaaccattaaattaaataaagaacacatttttatcatacatccacaccacaagatttgttgccatacctt 353  Q
    |||| ||||| |||||| ||||| |||||||| |||||  || |||||||||||||| |||||||||||| | | | ||| ||||||||| ||  ||| |    
T  45548142 aaaagtttcccaccata-aaaaattaattttatccatttgatcaaataaagaacacacttttatcatacacctataacactagatttgtttcctcaccat 45548044  T
Q  354 cttccacca 362  Q
    |||||||||    
T  45548043 cttccacca 45548035  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 39112307 - 39112347
Alignment:
Q  281 ttttaaccattaaattaaataaagaacacatttttatcata 321  Q
    |||| ||||||||||||||||||||||| | ||||||||||    
T  39112307 ttttgaccattaaattaaataaagaacatagttttatcata 39112347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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