View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17751_high_11 (Length: 264)

Name: NF17751_high_11
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17751_high_11
NF17751_high_11
[»] chr1 (21 HSPs)
chr1 (18-89)||(7385356-7385427)
chr1 (25-89)||(50030976-50031040)
chr1 (25-89)||(47655774-47655838)
chr1 (128-180)||(7385472-7385524)
chr1 (126-180)||(47655689-47655743)
chr1 (124-180)||(13509742-13509798)
chr1 (25-89)||(46033564-46033627)
chr1 (25-88)||(27416712-27416774)
chr1 (124-179)||(50031070-50031125)
chr1 (25-89)||(13509827-13509890)
chr1 (25-89)||(24075670-24075733)
chr1 (25-89)||(41512292-41512355)
chr1 (25-89)||(44740293-44740356)
chr1 (28-89)||(42137588-42137648)
chr1 (25-77)||(1762366-1762417)
chr1 (25-81)||(27067283-27067338)
chr1 (42-89)||(4485071-4485117)
chr1 (25-89)||(6706280-6706341)
chr1 (39-81)||(45179493-45179534)
chr1 (124-165)||(6706370-6706411)
chr1 (25-81)||(31100362-31100417)
[»] chr7 (18 HSPs)
chr7 (25-89)||(25472651-25472715)
chr7 (25-89)||(30139715-30139779)
chr7 (18-89)||(26826513-26826583)
chr7 (25-89)||(25970581-25970644)
chr7 (25-81)||(26827658-26827713)
chr7 (126-180)||(25472566-25472620)
chr7 (25-89)||(15000016-15000079)
chr7 (124-180)||(30139630-30139686)
chr7 (32-88)||(43664703-43664758)
chr7 (124-179)||(26827570-26827625)
chr7 (25-89)||(30825338-30825400)
chr7 (124-180)||(30825429-30825485)
chr7 (124-179)||(26826612-26826667)
chr7 (25-81)||(32450899-32450954)
chr7 (124-179)||(15000108-15000163)
chr7 (126-180)||(25970675-25970729)
chr7 (25-59)||(37371227-37371261)
chr7 (126-166)||(47085504-47085544)
[»] chr5 (15 HSPs)
chr5 (25-89)||(31905578-31905642)
chr5 (25-89)||(41742108-41742172)
chr5 (25-78)||(19356649-19356702)
chr5 (25-89)||(10900280-10900343)
chr5 (25-89)||(40979567-40979630)
chr5 (25-81)||(8958398-8958453)
chr5 (25-89)||(41040023-41040086)
chr5 (124-179)||(41039939-41039994)
chr5 (126-179)||(41742024-41742077)
chr5 (25-81)||(25256709-25256764)
chr5 (25-81)||(25320500-25320555)
chr5 (25-89)||(53554-53617)
chr5 (124-179)||(8958306-8958361)
chr5 (126-179)||(31905673-31905727)
chr5 (25-81)||(11018324-11018379)
[»] chr4 (23 HSPs)
chr4 (25-89)||(30418280-30418344)
chr4 (25-89)||(28963755-28963819)
chr4 (124-180)||(30418195-30418251)
chr4 (25-89)||(39732958-39733021)
chr4 (25-89)||(22606247-22606310)
chr4 (25-89)||(53663522-53663585)
chr4 (18-81)||(38767932-38767994)
chr4 (25-88)||(50523759-50523821)
chr4 (126-180)||(29385846-29385900)
chr4 (124-180)||(28963670-28963726)
chr4 (25-89)||(45105954-45106017)
chr4 (124-179)||(38768031-38768086)
chr4 (124-179)||(53403919-53403974)
chr4 (25-89)||(8510306-8510369)
chr4 (25-81)||(48407100-48407155)
chr4 (124-180)||(53663437-53663493)
chr4 (33-88)||(49723936-49723990)
chr4 (25-76)||(53404011-53404061)
chr4 (25-88)||(29385932-29385987)
chr4 (25-89)||(26457259-26457322)
chr4 (126-174)||(48407194-48407242)
chr4 (124-179)||(22606162-22606218)
chr4 (124-168)||(49724020-49724064)
[»] chr2 (11 HSPs)
chr2 (25-89)||(35458071-35458135)
chr2 (25-89)||(43342163-43342227)
chr2 (25-77)||(17480962-17481014)
chr2 (25-89)||(44002795-44002858)
chr2 (126-180)||(43342078-43342132)
chr2 (25-89)||(7473666-7473729)
chr2 (25-89)||(37640648-37640711)
chr2 (25-89)||(32497097-32497160)
chr2 (126-180)||(17481030-17481084)
chr2 (124-179)||(7473758-7473813)
chr2 (124-168)||(37640575-37640619)
[»] scaffold0068 (2 HSPs)
scaffold0068 (25-89)||(37843-37907)
scaffold0068 (124-178)||(37936-37990)
[»] chr8 (15 HSPs)
chr8 (25-89)||(45276289-45276353)
chr8 (25-88)||(22936457-22936520)
chr8 (25-81)||(2025661-2025716)
chr8 (25-89)||(8416810-8416874)
chr8 (126-180)||(22936372-22936426)
chr8 (25-81)||(13015827-13015882)
chr8 (131-179)||(45276206-45276254)
chr8 (124-180)||(8416903-8416960)
chr8 (25-89)||(35164268-35164331)
chr8 (25-89)||(35802231-35802294)
chr8 (124-179)||(35802147-35802202)
chr8 (28-80)||(7637381-7637432)
chr8 (25-81)||(36821522-36821577)
chr8 (124-179)||(35164184-35164239)
chr8 (25-81)||(33165940-33165995)
[»] chr3 (21 HSPs)
chr3 (25-89)||(48254390-48254454)
chr3 (25-89)||(39251624-39251688)
chr3 (25-89)||(51229875-51229938)
chr3 (25-89)||(30810856-30810919)
chr3 (25-89)||(33025685-33025748)
chr3 (25-89)||(42074540-42074603)
chr3 (25-89)||(45150746-45150809)
chr3 (124-180)||(48254305-48254361)
chr3 (25-88)||(51407612-51407674)
chr3 (25-86)||(28182518-28182578)
chr3 (124-180)||(39251717-39251771)
chr3 (25-89)||(11263839-11263902)
chr3 (25-89)||(50392707-50392770)
chr3 (25-89)||(48181217-48181280)
chr3 (25-89)||(53687264-53687327)
chr3 (124-179)||(11263931-11263986)
chr3 (124-179)||(45150838-45150893)
chr3 (27-89)||(42274667-42274728)
chr3 (25-81)||(44328800-44328855)
chr3 (25-81)||(44610720-44610775)
chr3 (124-179)||(42274757-42274813)
[»] chr6 (5 HSPs)
chr6 (26-81)||(365746-365801)
chr6 (18-88)||(10683298-10683365)
chr6 (124-179)||(10683395-10683450)
chr6 (25-81)||(20838390-20838445)
chr6 (25-81)||(27825147-27825202)
[»] scaffold0006 (2 HSPs)
scaffold0006 (26-88)||(91685-91746)
scaffold0006 (124-179)||(91776-91831)
[»] scaffold0097 (2 HSPs)
scaffold0097 (25-89)||(32949-33012)
scaffold0097 (126-179)||(32865-32918)
[»] scaffold0808 (2 HSPs)
scaffold0808 (124-179)||(4328-4383)
scaffold0808 (25-89)||(4238-4299)
[»] scaffold0069 (2 HSPs)
scaffold0069 (26-89)||(16960-17022)
scaffold0069 (124-179)||(17051-17106)
[»] scaffold0184 (1 HSPs)
scaffold0184 (25-69)||(9601-9644)


Alignment Details
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 7385356 - 7385427
Alignment:
Q  18 tattttactttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7385356 tattttactttatcaattctccttctttttactttgtaatttaatttgatgaatcaaatttaattagaaaac 7385427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 50030976 - 50031040
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50030976 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 50031040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 47655838 - 47655774
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  47655838 ctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 47655774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 7385472 - 7385524
Alignment:
Q  128 tatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7385472 tatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 7385524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 47655743 - 47655689
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47655743 tttatggtcatgacttaccaaattttgaatttttctttacggtatccccattcaa 47655689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 13509798 - 13509742
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  13509798 tgtttatggtcatgacttaccaaattttgaatttttctttacggtgtccccattcaa 13509742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 46033627 - 46033564
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  46033627 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaaaac 46033564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 27416712 - 27416774
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  27416712 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaaaa 27416774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 50031070 - 50031125
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50031070 tgtttatggtcatgacttaccaaattttgaatttttctttacggtgtccccattca 50031125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 13509890 - 13509827
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  13509890 ctttatcaatt-tccttctttttgctttgtaatttaacttgatgaaccaaatttaattacaaaac 13509827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 24075670 - 24075733
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||  |||||||||||||||| |||||||||||||| |||||||||| |||||||    
T  24075670 ctttatcaattctatttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaac 24075733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 41512292 - 41512355
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||||| |||||||    
T  41512292 ctttatcaattctccttctttttgttttgt-atttagtttgatgaaccaaatttaatcagaaaac 41512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 44740293 - 44740356
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||||| |||||||||||| |||| |||||||| |||||||||| |||||||    
T  44740293 ctttatcaattctccttctgtttgctttgtaa-ttaacttgatgaaccaaatttaatcagaaaac 44740356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 42137648 - 42137588
Alignment:
Q  28 tatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||||||||||||| ||||||| |||| || |||||||||| |||||||    
T  42137648 tatcaattctccttctttttgctttgt-atttaatctgataaaccaaatttaatcagaaaac 42137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 1762366 - 1762417
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatt 77  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  1762366 ctttatcaattctccttctttttggtttgt-atttaatttgatgaaccaaatt 1762417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 27067283 - 27067338
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||||||||||||||||| |||| ||||| ||||||||||||||| ||||||||||    
T  27067283 ctttatcaattctccttctctttgatttgt-atttaatttgatgaaccaaatttaat 27067338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 4485117 - 4485071
Alignment:
Q  42 ctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  4485117 ctttttgctttgtaatt-aatttgatgaaccaaatttaattagaaaac 4485071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 6706280 - 6706341
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||   ||||  || ||||||||||||||||| ||||||||||||||||||    
T  6706280 ctttatcaattctcctt---tttgaattataatttaatttgatgaaccaaatttaattagaaaac 6706341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 81
Target Start/End: Original strand, 45179493 - 45179534
Alignment:
Q  39 cttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||| |||||| |||||||||||||||||||||||||    
T  45179493 cttctttttgatttgta-tttaatttgatgaatcaaatttaat 45179534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 6706370 - 6706411
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttac 165  Q
    ||||||||||||||||||||| |||||| || ||||||||||    
T  6706370 tgtttatggtcatgacttaccaaattttaaaattttctttac 6706411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 31100417 - 31100362
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||||||||||||| ||||| ||||||||| ||| | || |||||||    
T  31100417 ctttatcaattctccttctttttggtttgt-atttaatttaatgtaccacatttaat 31100362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 25472715 - 25472651
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25472715 ctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 25472651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30139779 - 30139715
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  30139779 ctttatcaattctccttctttttgctttgtaatttaatttgataaaccaaatttaattagaaaac 30139715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 26826513 - 26826583
Alignment:
Q  18 tattttactttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||||    
T  26826513 tattttcctttatcaattctccttctttttgctttgtaa-ttaatgtgatgaaccaaatttaatcagaaaac 26826583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 25970581 - 25970644
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |||||||    
T  25970581 ctttatcaattctccttctttttgctttgtta-ttaatttgatgaaccaaatttaatgagaaaac 25970644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 26827713 - 26827658
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  26827713 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaat 26827658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 25472620 - 25472566
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||||||||    
T  25472620 tttatggtaatgacttacccaattttgaatttttctttagggtgtccccattcaa 25472566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 15000016 - 15000079
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||| |||||||||| |||||||    
T  15000016 ctttatcaatcctccttcttttttctttgtaa-ttaatttgatgaaccaaatttaatcagaaaac 15000079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30139686 - 30139630
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    |||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||    
T  30139686 tgtttacggtcatgacttaccaaattttgaatttttctttacgatgtccccattcaa 30139630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 43664758 - 43664703
Alignment:
Q  32 aattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||    
T  43664758 aattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaaaa 43664703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 26827625 - 26827570
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  26827625 tgtttatggtcatgagttaccaaattttgaattttcctttacggtgtccccattca 26827570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 30825338 - 30825400
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||| ||||||| |||||||||| || |||||||||| |||||||    
T  30825338 ctttatcaattctccttctttttgttttgtaa-ttaatttgat-aaccaaatttaatcagaaaac 30825400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 30825429 - 30825485
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||| ||||| |||||||||||||  |||||||| |||||||||||    
T  30825429 tgtttatggtcatgagttaccaaattttgaattttcttttacggtgtccccattcaa 30825485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 26826612 - 26826667
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||| ||||||    
T  26826612 tgtttatggtcatgagttaccaaattttgaattttcctttacggtgtccacattca 26826667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 32450899 - 32450954
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||||||||| |||||||||||  |||||| |||||||||||||| ||||||||||    
T  32450899 ctttatcaattatccttctttttagtttgta-tttaatttgatgaaccaaatttaat 32450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 15000108 - 15000163
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||| ||||| |||| || ||||||||||||    
T  15000108 tgtttatggtcatgagttaccaaattttggattttcctttgcgatatccccattca 15000163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 25970675 - 25970729
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||| ||||| ||||||| ||||| |||||| || |||||||||||    
T  25970675 tttatggtcatgaattaccaaattttggattttcctttacagtgtccccattcaa 25970729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 37371227 - 37371261
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaattt 59  Q
    ||||||||||||||||||||||||||||| |||||    
T  37371227 ctttatcaattctccttctttttgctttgcaattt 37371261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 47085544 - 47085504
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacg 166  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  47085544 tttatggtcatgagttaccaaattttggatttttctttacg 47085504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 31905578 - 31905642
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31905578 ctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 31905642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 41742172 - 41742108
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  41742172 ctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 41742108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 19356649 - 19356702
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaattt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19356649 ctttatcaattctccttctttttcctttgtaatttaatttgatgaatcaaattt 19356702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 10900280 - 10900343
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  10900280 ctttatcaattctctttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaac 10900343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 40979567 - 40979630
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||| |||||||    
T  40979567 ctttatcaattctccttctttttgccttgt-atttaatttgatgaaccaaatttaatcagaaaac 40979630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 8958453 - 8958398
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||    
T  8958453 ctttatcaattctcattctttttgctttgtaa-ttaatttgatgaaccaaatttaat 8958398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 41040086 - 41040023
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  41040086 ctttatcaattctctttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 41040023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 41039994 - 41039939
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  41039994 tgtttatggtcatgagttaccaaattttgaattttcctttacggtgtccccattca 41039939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 41742077 - 41742024
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||||||| |||||| |||||||||||||||| || |||||||    
T  41742077 tttatggtcatgacttaccaaattttaaatttttctttacggtgtctccattca 41742024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 25256764 - 25256709
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||    
T  25256764 ctttatcaattctccttttttttggtttgt-atttaatttgatgaaccaaatttaat 25256709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 25320555 - 25320500
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||    
T  25320555 ctttatcaattctccttttttttggtttgt-atttaatttgatgaaccaaatttaat 25320500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 53617 - 53554
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| || |||||||||| ||| || |||||||||| | ||||||||||||||||    
T  53617 ctttatcaattctcattttttttgctttttaa-ttgatttgatgaaccgaatttaattagaaaac 53554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 8958361 - 8958306
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| |||||   ||||| ||||| ||||||||||||||||||||    
T  8958361 tgtttatggtcatgaattaccatgttttggattttcctttacggtatccccattca 8958306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Original strand, 31905673 - 31905727
Alignment:
Q  126 tttatggtcat-gacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||| |||||||  ||||||||||||||||||||||| |||| |||||    
T  31905673 tttatggtcatagacttacaaaattttgaatttttctttacggtgtccctattca 31905727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 11018379 - 11018324
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||| |||||| ||||| ||||||||| ||||| ||||||||||| ||||||||||    
T  11018379 ctttagcaattccccttccttttgctttctaatt-aatttgatgaaccaaatttaat 11018324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 30418344 - 30418280
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  30418344 ctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 30418280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 28963819 - 28963755
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28963819 ctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 28963755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30418251 - 30418195
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30418251 tgtttatggtcatgacttatccaattttgaatttttctttacggtatccccattcaa 30418195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39732958 - 39733021
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  39732958 ctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaac 39733021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 22606310 - 22606247
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  22606310 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 22606247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 53663585 - 53663522
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  53663585 ctttatcaatcctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaaaac 53663522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 38767932 - 38767994
Alignment:
Q  18 tattttactttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||    
T  38767932 tatttcactttatcaattctccttctttttgctttgtaa-ttaatttgatgaacaaaatttaat 38767994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 50523821 - 50523759
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||| ||||||    
T  50523821 ctttatcaattcttcttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaa 50523759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 29385900 - 29385846
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  29385900 tttaaggtcatgacttacccaattttgaatttttatttacggtgtccccattcaa 29385846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 28963726 - 28963670
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||    
T  28963726 tgtttatggtcatgacttatcaaattttgaatttttctttacggtgtctccattcaa 28963670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 45105954 - 45106017
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||| |||||||    
T  45105954 ctttatcaattctctttctttttactttgtaa-ttaatttgatgaaccaaatttaataagaaaac 45106017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 38768031 - 38768086
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||    
T  38768031 tgtttatggtcgtgagttaccaaattttgaatttttctttacggtgtccccattca 38768086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 53403974 - 53403919
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||    
T  53403974 tgtttatggtcatgagttaccaaattctgaatttttctttacggtgtccccattca 53403919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8510306 - 8510369
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||| ||||||||||| || |||||| ||||| |||||||||| |||||||    
T  8510306 ctttatcaattctccttccttttgctttgt-atctaatttaatgaaccaaatttaatcagaaaac 8510369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 48407100 - 48407155
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||  |||||||||    
T  48407100 ctttatcaattctctttctttttgctttgtaa-ttaatttgatgaacaaaatttaat 48407155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 53663493 - 53663437
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||||||    
T  53663493 tgtttatggtcatgagttaccaaattttggattttcctttacggtgtccccattcaa 53663437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 49723936 - 49723990
Alignment:
Q  33 attctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||| ||||||    
T  49723936 attctccttctttttgctttgtaa-ttaatttgataaaccaaatttaatcagaaaa 49723990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 53404061 - 53404011
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaat 76  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||    
T  53404061 ctttatcaattctccttttttttgctttgtaa-ttaatttgatgaaccaaat 53404011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 29385987 - 29385932
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  29385987 ctttatcaattctccttctttttgctttgta--------tgatgaatcaaatttaattagaaaa 29385932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 26457259 - 26457322
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||| ||| || |||||||| | | ||||||||||||||||    
T  26457259 ctttatcaattctcattctttttgctttttaa-ttgatttgatgtaccgaatttaattagaaaac 26457322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 48407194 - 48407242
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatcccc 174  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| |||||    
T  48407194 tttatggtcatgagttaccaaattttgaattttcctttacggtgtcccc 48407242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 22606218 - 22606162
Alignment:
Q  124 tgtttatggtcatgacttacccaa-ttttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||  |||| ||||||||||| ||||||||| ||||||||||    
T  22606218 tgtttatggtcatgagtttgccaaattttgaattttcctttacggtgtccccattca 22606162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 49724020 - 49724064
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggt 168  Q
    ||||||||||||||| ||||| ||||||| ||||| |||||||||    
T  49724020 tgtttatggtcatgagttaccaaattttggattttcctttacggt 49724064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 35458135 - 35458071
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35458135 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcatatttaattagaaaac 35458071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 43342227 - 43342163
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43342227 ctttatcaattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 43342163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 17480962 - 17481014
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatt 77  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  17480962 ctttatcaattctccttcattttgctttgtaatttaatttgatgaaccaaatt 17481014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 44002795 - 44002858
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  44002795 ctttatcaattatccttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaac 44002858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 43342132 - 43342078
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  43342132 tttatggtcatgacttaccaaattttgaatttttctttacagtgtccccattcaa 43342078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 7473666 - 7473729
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  7473666 ctttatcaattctctttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 7473729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 37640711 - 37640648
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  37640711 ctttataaattctccttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 37640648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 32497160 - 32497097
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| || | | |||||||||||| |||||||||||||||||||||| |||||||    
T  32497160 ctttatcaattctcattatctctgctttgtaatt-aatttgatgaatcaaatttaatcagaaaac 32497097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 17481030 - 17481084
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    |||||| |||||||||||| |||||| |||||||||||||| | |||||||||||    
T  17481030 tttatgatcatgacttaccaaattttaaatttttctttacgatgtccccattcaa 17481084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 7473758 - 7473813
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| |||||| |||||| ||||||||| ||| ||||||    
T  7473758 tgtttatggtcatgaattaccaaattttaaattttcctttacggtgtccgcattca 7473813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 37640619 - 37640575
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggt 168  Q
    ||||||||||||||| ||| | ||||||||||||| |||||||||    
T  37640619 tgtttatggtcatgagttaacaaattttgaattttcctttacggt 37640575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 37843 - 37907
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  37843 ctttatcaattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaac 37907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 178
Target Start/End: Original strand, 37936 - 37990
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattc 178  Q
    |||||||||| | |||||||| ||||||||||||||||||||||| |||||||||    
T  37936 tgtttatggtaacgacttaccaaattttgaatttttctttacggtgtccccattc 37990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 45276353 - 45276289
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45276353 ctttatcaattctcctactttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 45276289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 22936520 - 22936457
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  22936520 ctttatcaattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaa 22936457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 2025661 - 2025716
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  2025661 ctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaat 2025716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 8416810 - 8416874
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  8416810 ctttatcaatactccttctttttgctttgtaattaaatatgatgaaccaaaattaattagaaaac 8416874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 22936426 - 22936372
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||    
T  22936426 tttatggtcgtgacttaccaaattttgaatttttctttacggtgtccccattcaa 22936372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 13015827 - 13015882
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||    
T  13015827 ctttatcaattctctttctttttggtttgta-tttaatttgatgaatcaaatttaat 13015882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Complemental strand, 45276254 - 45276206
Alignment:
Q  131 ggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  45276254 ggtcatgacttaccgaattttgaatttttctttacggtgtccccattca 45276206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 8416903 - 8416960
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaa-tttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||||| ||||||||| ||||| |||||||| |||||||||||    
T  8416903 tgtttatggtcatgacttaccaaattttgaattttttttttacggtgtccccattcaa 8416960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 35164331 - 35164268
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||| ||||||||||||||||| ||||||| ||| ||||||||| |||||||||| |||||||    
T  35164331 ctttattaattctccttctttttgttttgtaa-ttagtttgatgaaccaaatttaatcagaaaac 35164268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 35802294 - 35802231
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||   |||||||| |||||||    
T  35802294 ctttatcaattctccttctttttgctttataa-ttaatttgatgaacacaatttaatcagaaaac 35802231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 35802202 - 35802147
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||| | ||||||||||    
T  35802202 tgtttatggtcatgagttaccaaattttgaattttcctttacgatgtccccattca 35802147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 7637381 - 7637432
Alignment:
Q  28 tatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaa 80  Q
    ||||||||||||||| ||||||||||| |||||||||||||||  ||||||||    
T  7637381 tatcaattctccttcattttgctttgt-atttaatttgatgaaataaatttaa 7637432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 36821577 - 36821522
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||| |||||||| ||||||||||||| ||| ||||||||||||| ||||||||||    
T  36821577 ctttaacaattctcattctttttgctttctaa-ttaatttgatgaaccaaatttaat 36821522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 35164239 - 35164184
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||| |||||  |||||||| ||||||||||    
T  35164239 tgtttatggtcatgagttaccaaattttggattttcttttacggtgtccccattca 35164184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 33165940 - 33165995
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    ||||||||||||||||| ||| || ||||| ||||||||||| ||| ||||||||||    
T  33165940 ctttatcaattctccttttttatggtttgt-atttaatttgaggaaacaaatttaat 33165995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 48254454 - 48254390
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  48254454 ctttatcaattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaac 48254390  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 39251624 - 39251688
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||    
T  39251624 ctttatcaattctccttctttttggttggtaatttaatttgatgaaccaaatttaattagaaaac 39251688  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 51229875 - 51229938
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  51229875 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaatcaaatttaataagaaaac 51229938  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 30810856 - 30810919
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  30810856 ctttatcaattctccttctttttgctttgt-atttaatttgatgaaccaaatttaatcagaaaac 30810919  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 33025748 - 33025685
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |||||||    
T  33025748 ctttatcaattctccttctttttgctttgtaa-ttaattcgatgaaccaaatttaatcagaaaac 33025685  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 42074540 - 42074603
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||    
T  42074540 ctttaccaattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaaaac 42074603  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 45150746 - 45150809
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  45150746 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 45150809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 48254361 - 48254305
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||    
T  48254361 tgtttatggtcatgacttatcaaattttgaatttttctttacggtgtccccattcaa 48254305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 51407612 - 51407674
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||||| ||||||    
T  51407612 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaaccgaatttaatcagaaaa 51407674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 28182518 - 28182578
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaa 86  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| ||||    
T  28182518 ctttatcagttctccttctttttgctttgtaa-ttaatttgatgaaccaaatttaatcagaa 28182578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 39251717 - 39251771
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattcaa 180  Q
    ||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||    
T  39251717 tgtttatggtcatgacttaccaaattttgaatttttctttacgg--tccccattcaa 39251771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 11263839 - 11263902
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||||||||||| |||||||||||||  ||||| ||| |||||||    
T  11263839 ctttatcaattctccttctttttgctttgtaa-ttaatttgatgaacaaaattcaatcagaaaac 11263902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 50392770 - 50392707
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||| |||||||||| |||||||    
T  50392770 ctttatcatttctccttctttttgttttgta-tttaatttgatgaaccaaatttaatcagaaaac 50392707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 48181217 - 48181280
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||| |||||| |||||||||||||||||| ||||||| ||||| |||||||||| |||||||    
T  48181217 ctttataaattcttcttctttttgctttgtaa-ttaatttcatgaaccaaatttaatcagaaaac 48181280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 53687327 - 53687264
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||  |||||| ||| |||||||    
T  53687327 ctttatcaattctccttcattttgctttgtaa-ttaatttgatgagccaaattaaataagaaaac 53687264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 11263931 - 11263986
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||| | ||||||||||||| ||||||||| ||||||||||    
T  11263931 tgtttatggtcatgagttatcaaattttgaattttcctttacggtgtccccattca 11263986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 45150838 - 45150893
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||||||||| ||||| ||| ||||||||||    
T  45150838 tgtttatggtcatgaattaccaaattttgaattttcctttatggtgtccccattca 45150893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 42274667 - 42274728
Alignment:
Q  27 ttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||| ||||||||||| |||||||| ||||||||||||| ||||||| || |||||||    
T  42274667 ttatcaattttccttctttttcctttgtaa-ttaatttgatgaaccaaatttgatcagaaaac 42274728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 44328800 - 44328855
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||| ||||||||| ||||| |||||||||||| || ||||||||||    
T  44328800 ctttatcaattctcattctttttggtttgt-atttaatttgataaaccaaatttaat 44328855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 44610775 - 44610720
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||| ||||||||||| | |||||| |||||||||||||| ||||||||||    
T  44610775 ctttatcaatgctccttcttttcgatttgta-tttaatttgatgaaccaaatttaat 44610720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 42274757 - 42274813
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttc-tttacggtatccccattca 179  Q
    ||||||| ||||||| ||||| ||||||||||||| | |||||||| ||||||||||    
T  42274757 tgtttatagtcatgagttaccaaattttgaattttccttttacggtgtccccattca 42274813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 365746 - 365801
Alignment:
Q  26 tttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  365746 tttatcaattctgcttctttttgctttgtaatttaatttgatgaaccaaatttaat 365801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 10683298 - 10683365
Alignment:
Q  18 tattttactttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    |||||| |||||||||||||||||   ||||  |||||||||||||||||||| |||||||||||||||||    
T  10683298 tattttcctttatcaattctcctt---tttgaattgtaatttaatttgatgaaccaaatttaattagaaaa 10683365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 10683395 - 10683450
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    |||||||||| |||||||||| |||||| |||||||||||||||| ||||||||||    
T  10683395 tgtttatggtaatgacttaccaaattttaaatttttctttacggtgtccccattca 10683450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 20838445 - 20838390
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||    
T  20838445 ctttatcaattcacattctttttgctttgt-atttaatttgatgaaccaaatttaat 20838390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 27825147 - 27825202
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaat 81  Q
    |||||||||||||||||||||||  ||||| ||||||||||||||| ||||||||||    
T  27825147 ctttatcaattctccttctttttcgtttgt-atttaatttgatgaaccaaatttaat 27825202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 91685 - 91746
Alignment:
Q  26 tttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaa 88  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||    
T  91685 tttatcaattctccttctttttgctttgtaa-ttaatttgatgaaccaaatttattcagaaaa 91746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 91776 - 91831
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||  ||||||||||    
T  91776 tgtttatggtcatgaattaccaaattttggattttcctttacggcgtccccattca 91831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 33012 - 32949
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||  ||||||||| |||||||    
T  33012 ctttatcaattatccttctttttgctttgtaa-ttaatttgatgaacaaaatttaatcagaaaac 32949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 32918 - 32865
Alignment:
Q  126 tttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||| ||||| ||||||||||||| ||||||||| ||||||||||    
T  32918 tttatggtcatgagttaccaaattttgaattttcctttacggtgtccccattca 32865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 4328 - 4383
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||||||||| |||||||||||||| |||||| | ||||||||||    
T  4328 tgtttatggtcatgacttaccaaattttgaatttttttttacgatgtccccattca 4383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 4238 - 4299
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||   ||||  |||||||||||||||||||| ||||||||||||||||||    
T  4238 ctttatcaattctcctt---tttgaattgtaatttaatttgatgaaccaaatttaattagaaaac 4299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 16960 - 17022
Alignment:
Q  26 tttatcaattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaac 89  Q
    |||||||||||||||||||||||| |||||| ||||||||||||| |||||||| |||| ||||    
T  16960 tttatcaattctccttctttttgcgttgtaa-ttaatttgatgaaccaaatttatttaggaaac 17022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 17051 - 17106
Alignment:
Q  124 tgtttatggtcatgacttacccaattttgaatttttctttacggtatccccattca 179  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||  ||||||||||    
T  17051 tgtttatggtcatgagttaccaaattttggattttcctttacggcgtccccattca 17106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 9644 - 9601
Alignment:
Q  25 ctttatcaattctccttctttttgctttgtaatttaatttgatga 69  Q
    ||||||||||||||||||||||||||| || ||||||||| ||||    
T  9644 ctttatcaattctccttctttttgcttcgt-atttaatttcatga 9601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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