View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17751_high_17 (Length: 209)
Name: NF17751_high_17
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_high_17 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: scaffold0651 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 3675 - 3852
Alignment:
| Q |
16 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3675 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagcc |
3774 |
T |
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| Q |
116 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3775 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
3852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 31319995 - 31319818
Alignment:
| Q |
16 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31319995 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagcc |
31319896 |
T |
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| Q |
116 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
193 |
Q |
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| T |
31319895 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
31319818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 31332248 - 31332071
Alignment:
| Q |
16 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagattttgataggacagaagctgctacacctcctccacagcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31332248 |
atgaataatctttgggaacaaaatagtttcctttctcgagaacaaccactttgtagccagcttttgataggacagaagctgctacacctcctccacagcc |
31332149 |
T |
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| Q |
116 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332148 |
agaaccaacaactactgcatcacatttgattttgaggatgttgtttttggagtcaagtgtaacattgaggcctttgtt |
31332071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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