View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17751_high_3 (Length: 490)
Name: NF17751_high_3
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_high_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 438470 - 438011
Alignment:
| Q |
12 |
aatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcg |
111 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438470 |
aatactcgtcaggccgtaggagttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcg |
438371 |
T |
|
| Q |
112 |
ttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacat |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
438370 |
ttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaagcat |
438271 |
T |
|
| Q |
212 |
taccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438270 |
taccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatac |
438171 |
T |
|
| Q |
312 |
aactcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaag |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
438170 |
aactcggctaatgaaaaatgtacaagtttgattctccttccattccacaaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaag |
438071 |
T |
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| Q |
412 |
atataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtg |
471 |
Q |
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| T |
438070 |
atataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgtggaccgtg |
438011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 463
Target Start/End: Original strand, 28608432 - 28608885
Alignment:
| Q |
10 |
ataatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaat |
109 |
Q |
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||||||||||||| || | ||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||| ||||||||||||||| | |
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| T |
28608432 |
ataatactcgtcaagctgtaggggttattagcctcattgaatctttcaatgccactagactttcccctatgcatatttttgcactttaccttgttgaact |
28608531 |
T |
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| Q |
110 |
cgttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaac |
209 |
Q |
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| T |
28608532 |
cgttggacgtgatggtgcacttgttgcttctcatatggagaagcctagtggccaatctggaacacaaaatcttacaagatcccagatagagttagaaagt |
28608631 |
T |
|
| Q |
210 |
attaccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatat |
309 |
Q |
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| T |
28608632 |
attgataataaatttgaagcactcagagaggcatatgatgctatcagagtagaaacgttaaatgttgtgtccgaatatgcaaccattcacgaagacatat |
28608731 |
T |
|
| Q |
310 |
acaactcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaa |
409 |
Q |
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|||| | | ||| |||||| |||||| |||||||||||||||||||| |||||||||||| | ||||||||| | ||||||||| || ||| | ||| |
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| T |
28608732 |
acaatttagttaacgaaaaacatacaagcttgattctccttccattccacaaacaactaagtccggaaggtgcatttgaaacaactgatgttgcgttcaa |
28608831 |
T |
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| Q |
410 |
agatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgt |
463 |
Q |
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| T |
28608832 |
agatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggattatttgt |
28608885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 29 - 463
Target Start/End: Original strand, 13652322 - 13652756
Alignment:
| Q |
29 |
aggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaatcgttggacgtgttggtgcc |
128 |
Q |
| |
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||||||||| | ||||||| | | ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||| ||||| |
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| T |
13652322 |
aggggttatcaacctcattcagtctttcaatgccactagaatttcccctatacatgttttttcactttaccttattgaactcaaaggacgtaccggtgca |
13652421 |
T |
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| Q |
129 |
cttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaacattaccaatacctttgaag |
228 |
Q |
| |
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||||||||| |||||||||| || |||||| ||| ||||| ||||||||||||| |||||| ||||| ||||| ||||| ||||| ||||||| |
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| T |
13652422 |
cttgttgctgctcatatggataagcctagtgtgcaacctggagcacaaaatcttaccagttcccaggtagagcaagaaagcattaataatacatttgaag |
13652521 |
T |
|
| Q |
229 |
cattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatatacaactcggctaatgaaaa |
328 |
Q |
| |
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|||| |||||| || |||||| ||||||||| ||| |||||||||||||| |||||||||||||||||| || ||||| || || ||||||||||| |
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| T |
13652522 |
catttggagaggcgtacgatgctgttagagtccgaaccttaaatgttgtgtcatcctatgcaaccattcacgaggacatatataattcagctaatgaaaa |
13652621 |
T |
|
| Q |
329 |
atgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaaagatataaacttgaatgtg |
428 |
Q |
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| T |
13652622 |
acacacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaaagatataaacctgaatgtg |
13652721 |
T |
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| Q |
429 |
atgcaaagtgcaccttgctctgtgggaatatttgt |
463 |
Q |
| |
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||||||| ||||||||||||||||||||| ||||| |
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| T |
13652722 |
atgcaaactgcaccttgctctgtgggaatctttgt |
13652756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 10 - 463
Target Start/End: Original strand, 13659803 - 13660256
Alignment:
| Q |
10 |
ataatactcgtcaggccgcaggggttattagcctcattgaatatttcaatgccactagaatttcccctatacatgtttttggcctttaccttgttgaaat |
109 |
Q |
| |
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||||| |||| ||||| |||||||||| |||||| |||||| ||||||||| |||||||||||||||||||||||||| | ||||||||| ||||| | |
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| T |
13659803 |
ataatgctcgccaggctacaggggttatcagcctcgttgaatctttcaatgctactagaatttcccctatacatgttttcgcactttaccttattgaact |
13659902 |
T |
|
| Q |
110 |
cgttggacgtgttggtgcccttgttgcttctcatatggaaaaatctagtggccaatctggaacacaaaatcttacacaatcccagctagagttagaaaac |
209 |
Q |
| |
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| |||||| |||||| |||||||| |||||||||| || ||||| |||| ||||| | |||||||||||| |||||| ||||| ||||| | |
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| T |
13659903 |
caaaggacgtactggtgcacttgttgccgctcatatggataagcctagtaaccaacctggagcgcaaaatcttacaagatcccaagtagagcaagaaagc |
13660002 |
T |
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| Q |
210 |
attaccaatacctttgaagcattcaaagaggcatatgatgctattagagtccaaacactaaatgttgtgtcaaactatgcaaccattcacgaagatatat |
309 |
Q |
| |
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|||| ||||| ||||||||| | |||||||||||||||| | |||||| |||| |||||||||||||| |||| |||||||||| || || |||| |
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| T |
13660003 |
attaataatacatttgaagcacttggagaggcatatgatgctgtcagagtcgaaaccttaaatgttgtgtcatcctattcaaccattcatgaggacatat |
13660102 |
T |
|
| Q |
310 |
acaactcggctaatgaaaaatgtacaagtttgattctccttccattccataaacaactaagttcagaaggtgcactcgaaacaactaatactgcatacaa |
409 |
Q |
| |
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| ||||| |||||||||||| | ||||| ||||| | ||||||||||||||||| |||||||| |||||||||||||||||||| | ||||||||| |
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| T |
13660103 |
ataactctgctaatgaaaaacgcacaagcatgattatacttccattccataaacacttaagttcattaggtgcactcgaaacaactagtgttgcatacaa |
13660202 |
T |
|
| Q |
410 |
agatataaacttgaatgtgatgcaaagtgcaccttgctctgtgggaatatttgt |
463 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||||||| ||||| |
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|
| T |
13660203 |
agatataaaccagaatgtgatgcaaacttcaccttgctctgtgggaatctttgt |
13660256 |
T |
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