View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17751_high_4 (Length: 487)
Name: NF17751_high_4
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 9378368 - 9378828
Alignment:
| Q |
18 |
aatagaacaaatcaagtcattccacctagacatctaaattttgagttagaagttattcctgaaatagactaaaattactttcaggttcatcaaatgtaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378368 |
aatagaacaaatcaagtcattccacctagacatctaaattttgagttagaagttattcctgaaatagactaaaattactttcaggttcatcaaatgtaat |
9378467 |
T |
|
| Q |
118 |
atctacttgttgaagtctatcaaaattgaaaatatatttcaaatagttatgctgaagcaatcagttttatggttacaataatatgctgccacatcatgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9378468 |
atctacttgttgaagtctatcaaaattgaaaatatatttcaaatagttatgctgaagcaatcagttttatggttacaataatatgctgccacattatgtt |
9378567 |
T |
|
| Q |
218 |
atttttgtatgttatcgttgttacatcagttaccggctataatt-atgtaattgaattatgttatgacggctattagttcaagacttgtattaagttgcc |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
|
|
| T |
9378568 |
atttatgtatgttatcgttgttacatcagttactggctataattgatgtaattgaattatgttacgacggctattagttcaagacttgtattaagttacc |
9378667 |
T |
|
| Q |
317 |
tattgcatacggcatctttatgtgtgagacgtattcatgtaaattttatgagaaatagaagtaagaaaatttgatagatcaatgggaattgaacaataca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378668 |
tattgcatacggcatctttatgtgtgagacgtattcatgtaaattttatgagaaatagaagtaagaaaatttgatagatcaatgggaattgaacaataca |
9378767 |
T |
|
| Q |
417 |
tgaaagtgtggacaaaagagaggctaaacagcagtaaataacatttaaagtactacctatg |
477 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9378768 |
tgaaagtgtggacaaaagagaggctaaacagcagtaaataacatttaaagtactacctatg |
9378828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 9235864 - 9235794
Alignment:
| Q |
19 |
atagaacaaatcaagtcattccacctagacatctaaattttgagttagaagttattcctgaaatagactaa |
89 |
Q |
| |
|
||||||||||| |||| |||||| |||||| ||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
9235864 |
atagaacaaatgaagttattccaactagacttctaaattttgagttggaagttattcctgaaataaactaa |
9235794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 301
Target Start/End: Complemental strand, 9235469 - 9235402
Alignment:
| Q |
235 |
ttgttacatcagttaccggctataattatgt-aattgaattatgttatgacggctattagttcaagac |
301 |
Q |
| |
|
|||||||||||||| | | |||||||| || || |||||||||||||||| |||||||||||||||| |
|
|
| T |
9235469 |
ttgttacatcagttgcagactataattgagttaactgaattatgttatgactgctattagttcaagac |
9235402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 9235563 - 9235485
Alignment:
| Q |
127 |
ttgaagtctatcaaaattgaaaatatatttcaaatagttatgctgaagcaatcagttttatggttacaataatatgctgc |
206 |
Q |
| |
|
||||||| |||||||||| ||||| | |||||| ||||||| |||| | ||| |||| | |||||||||||||||||||| |
|
|
| T |
9235563 |
ttgaagtgtatcaaaattcaaaatctttttcaagtagttat-ctgaggtaatgagttgtttggttacaataatatgctgc |
9235485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University