View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17751_high_8 (Length: 368)

Name: NF17751_high_8
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17751_high_8
NF17751_high_8
[»] chr1 (2 HSPs)
chr1 (204-368)||(48993736-48993900)
chr1 (92-197)||(48996131-48996236)
[»] chr7 (1 HSPs)
chr7 (1-72)||(19728594-19728665)
[»] chr5 (3 HSPs)
chr5 (222-343)||(22623848-22623969)
chr5 (1-71)||(19513428-19513498)
chr5 (1-72)||(4399984-4400055)
[»] chr3 (1 HSPs)
chr3 (1-72)||(14867747-14867818)
[»] chr8 (2 HSPs)
chr8 (1-72)||(24793858-24793929)
chr8 (1-72)||(11394310-11394380)
[»] chr4 (2 HSPs)
chr4 (4-72)||(42953456-42953524)
chr4 (1-69)||(9992803-9992871)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 204 - 368
Target Start/End: Complemental strand, 48993900 - 48993736
Alignment:
Q  204 ctgtaactccaaagataatcaattactctaaagtaaattataatgtatatagaaagtgagaaaagagcaaacacgtgctgccagaatagaactgctgaag 303  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48993900 ctgtaactctaaagataatcaattactctaaagtaaattataatgtatagagaaagtgagaaaagagcaaacacgtgctgccagaatagaactgctgaag 48993801  T
Q  304 cttcactgactgcataacccctcaagctagcaattgctcccaacaaaatagcacttggtgttgta 368  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48993800 cttcactgactgcataacccctcaagctagcaattgctcccaacaaaatagcacttggtgttgta 48993736  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 48996236 - 48996131
Alignment:
Q  92 ataatagcatcctactaatgataaatacaaatattgaatacaactattggttctataaatatgaaccaactttaggggataaaaccccattggcatggaa 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||    
T  48996236 ataatagcatcctactaatgataaataaaaatattgaatacaactattggttctataataatgaaccaactttaggggataaaacctcattggcatggaa 48996137  T
Q  192 aaacta 197  Q
    ||||||    
T  48996136 aaacta 48996131  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19728594 - 19728665
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    ||||||||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||    
T  19728594 cactatccctgttgggattggcagacgctgtaaggacctcataagcacctcgaactgtgaaacctccaatgg 19728665  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 222 - 343
Target Start/End: Original strand, 22623848 - 22623969
Alignment:
Q  222 tcaattactctaaagtaaattataatgtatatagaaagtgagaaaagagcaaacacgtgctgccagaatagaactgctgaagcttcactgactgcataac 321  Q
    ||||||| ||| ||||| |||| |||||| |  ||||| |||||||| |||||||| || |||||||| |||| ||||||||||||||| ||||||||||    
T  22623848 tcaattattctgaagtagattacaatgtagaatgaaagagagaaaagggcaaacacatgttgccagaagagaagtgctgaagcttcactaactgcataac 22623947  T
Q  322 ccctcaagctagcaattgctcc 343  Q
    |||||||||| ||||| |||||    
T  22623948 ccctcaagcttgcaatagctcc 22623969  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19513498 - 19513428
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatg 71  Q
    |||||||||||||||||||| ||| |  ||||||||||||||| |||||||||||||||||||||||||||    
T  19513498 cactatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaactgtgaaacctccaatg 19513428  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 4399984 - 4400055
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    |||||||| ||||||||||| ||| |  ||||||||||||||| |||||||||||| |||||||||||||||    
T  4399984 cactatccttgttgggattgacagtcgctgtaaggacctcataagcacctcgaactttgaaacctccaatgg 4400055  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14867818 - 14867747
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||||||||||||||||||||||||||    
T  14867818 cactatccctgttgggattggcagacgctgcaaggacctcataagcacctcgaactgtgaaacctccaatgg 14867747  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24793858 - 24793929
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    |||||||||||||||||||| ||| |  ||||||||||| ||| ||||||||||||||||||||||||||||    
T  24793858 cactatccctgttgggattgacagtcgctgtaaggaccttataagcacctcgaactgtgaaacctccaatgg 24793929  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 11394380 - 11394310
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    |||||||||||||||||||| ||| |  ||||||||||||||| |||||||||||| |||||||||||||||    
T  11394380 cactatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaact-tgaaacctccaatgg 11394310  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 42953524 - 42953456
Alignment:
Q  4 tatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaatgg 72  Q
    ||||||||||||||||| ||| |  ||||||||||||||| |||||||||||| |||||||||||||||    
T  42953524 tatccctgttgggattgacagtcgctgtaaggacctcataagcacctcgaactatgaaacctccaatgg 42953456  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 9992871 - 9992803
Alignment:
Q  1 cactatccctgttgggattggcagacattgtaaggacctcatacgcacctcgaactgtgaaacctccaa 69  Q
    |||||||| ||||||| ||| ||  || ||| || |||||||| |||||||||||||||||||||||||    
T  9992871 cactatccatgttggggttgacatgcactgttagaacctcataagcacctcgaactgtgaaacctccaa 9992803  T

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