View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17751_low_10 (Length: 322)
Name: NF17751_low_10
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_low_10 |
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| [»] scaffold0755 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 32955432 - 32955152
Alignment:
| Q |
19 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaaggat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32955432 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaaagat |
32955333 |
T |
|
| Q |
119 |
tttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgattaca |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32955332 |
tttgaacaagaaaactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgattaca |
32955233 |
T |
|
| Q |
219 |
tgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32955232 |
tgtatattagattaagtctctctcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaattaaatca |
32955152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 48577644 - 48577364
Alignment:
| Q |
19 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaaggat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
48577644 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaatggttgcaggaaggttggatctgtttgaaggat |
48577545 |
T |
|
| Q |
119 |
tttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgattaca |
218 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48577544 |
tttgaacaagaagattggacagctgttattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaagtcagattttgattaca |
48577445 |
T |
|
| Q |
219 |
tgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48577444 |
tgtatattagattaagtctctatcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
48577364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 5913198 - 5912919
Alignment:
| Q |
19 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaaggat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
5913198 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaaggttggatctgtttgaaggat |
5913099 |
T |
|
| Q |
119 |
tttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgattaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||| |
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|
| T |
5913098 |
tttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaattca-ttttttattaca |
5913000 |
T |
|
| Q |
219 |
tgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5912999 |
tgtatattagattaagtcgctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
5912919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 50672111 - 50672390
Alignment:
| Q |
19 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaaggat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
50672111 |
cgattgaatccatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaaggattgcaggaaggttggatctgtttgaaggat |
50672210 |
T |
|
| Q |
119 |
tttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgattaca |
218 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| |
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|
| T |
50672211 |
tttgaacaagaagactggacaactgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaattca-tttttgattaca |
50672309 |
T |
|
| Q |
219 |
tgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50672310 |
tgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
50672390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 10463294 - 10463575
Alignment:
| Q |
19 |
cgattgaatccat--gttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaagg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
10463294 |
cgattgaatccatatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaaggttggatctgtttgaagg |
10463393 |
T |
|
| Q |
117 |
attttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
10463394 |
attttgaacaagaagactggacagctgctattgggatggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaattca-tttttgatta |
10463492 |
T |
|
| Q |
217 |
catgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10463493 |
catgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
10463575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 299
Target Start/End: Original strand, 43732948 - 43733229
Alignment:
| Q |
19 |
cgattgaatccat--gttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaagg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
43732948 |
cgattgaatccatatgttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcaggaaggttggatctgtttgaagg |
43733047 |
T |
|
| Q |
117 |
attttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
43733048 |
attttgaacaagaagactggacagctgctattgggatggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaattca-tttttgatta |
43733146 |
T |
|
| Q |
217 |
catgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43733147 |
catgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
43733229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 25864277 - 25863996
Alignment:
| Q |
19 |
cgattgaatccat--gttgttttggtgaataagatttttggcttatcaagatgatttttggtgtgtcaagggttgcagggaggttggatctgtttgaagg |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25864277 |
cgattgaatccatatgttgttttggtgaataagatttttggcttatcaagacgatttttggtgtgtcaagggttgcaggaaggttggatctgtttgaagg |
25864178 |
T |
|
| Q |
117 |
attttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaatcaagtcagattttgatta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |
|
|
| T |
25864177 |
attttgaacaagaagactggacagctgctattgggaaggaaagtctctaaagaaggcttagatcttgttatgtgtattcaattaattca-tttttgatta |
25864079 |
T |
|
| Q |
217 |
catgtatattagattaagtctctcttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25864078 |
catgtatattagattaagtctctgtcatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
25863996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 32327384 - 32327452
Alignment:
| Q |
84 |
aagggttgcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32327384 |
aagggttgcaggagggttggatctgtttgaagggttttgaacaagaagactggacagctgctactggga |
32327452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 32327460 - 32327548
Alignment:
| Q |
212 |
gattacatgtatattagattaagtctctcttatgtaatttgg-atctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||| || || |||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
32327460 |
gattacatgtatattagattaactctctttcatgtaatctgttatgtcaatgtgtacatgaaattaagttttatccatctatgaaatca |
32327548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0755 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0755
Description:
Target: scaffold0755; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 4716 - 4784
Alignment:
| Q |
84 |
aagggttgcagggaggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4716 |
aagggttgcaggagggttggatctgtttgaaggattttgaacaagaagactggacagctgctattggga |
4784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 22681044 - 22681102
Alignment:
| Q |
241 |
ttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaatgaaatca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22681044 |
ttatgtaatttggatctcaatgtgtatatgaaattaagttttatccatcaataaaatca |
22681102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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