View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17751_low_11 (Length: 309)

Name: NF17751_low_11
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17751_low_11
NF17751_low_11
[»] chr5 (10 HSPs)
chr5 (19-309)||(39470859-39471148)
chr5 (24-199)||(39464641-39464816)
chr5 (21-144)||(39471978-39472101)
chr5 (20-200)||(39460139-39460316)
chr5 (21-137)||(39454588-39454704)
chr5 (21-121)||(39480338-39480438)
chr5 (21-144)||(39450942-39451065)
chr5 (24-139)||(39486406-39486521)
chr5 (258-303)||(39464853-39464898)
chr5 (23-121)||(39458400-39458498)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 309
Target Start/End: Original strand, 39470859 - 39471148
Alignment:
Q  19 agacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccac 118  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39470859 agacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggataaacaccac 39470958  T
Q  119 ttccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctgnnnnnnnnnnncctt 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||    
T  39470959 ttccactttcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatacctg-ttttttttttcctt 39471057  T
Q  219 tctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaatctttgtgagtgatgtcatggctttgcgggatg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39471058 tctttaggaacaggaatagatgaattcgtgtagagatttagtatcataataaaagaaacctttgtgagtgatgtcatggctttgcgggatg 39471148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 39464641 - 39464816
Alignment:
Q  24 gttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcca 123  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||      
T  39464641 gttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctg 39464740  T
Q  124 ctgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatata 199  Q
    || ||||||| ||| |||||| ||||| ||||||||| || ||||||  ||||| ||||||||||| |||||||||    
T  39464741 ctttcttcattttgaagcacaggacatgcacttactcggtttgagttgatgtttttctgaattgttgtttgatata 39464816  T

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Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 39472101 - 39471978
Alignment:
Q  21 acagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccactt 120  Q
    |||||||||||||| ||||||||| |||||||||||||||| || ||||| |  |||||||||| ||||||  |||| |||||||||| |||||||||||    
T  39472101 acagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacaccactt 39472002  T
Q  121 ccactgtcttcatgttggagcaca 144  Q
    |  || ||||||| ||||||||||    
T  39472001 ctgctttcttcatcttggagcaca 39471978  T

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Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 39460316 - 39460139
Alignment:
Q  20 gacagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccact 119  Q
    |||||| ||||||||||| |||||| ||||| |||||||||| |||||||| | ||  ||| ||||||| |    | ||||||||||||||||||| |||    
T  39460316 gacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaact 39460217  T
Q  120 tccactgtcttcatgttggagcacaagacatacacttactcagtgtgagttactgtttctctgaattgttctttgatatac 200  Q
    ||  || ||||||| |||||||||| || |||| |||||||  ||| ||||||||||| | ||||||||||||||||||||    
T  39460216 tctgctttcttcatcttggagcacaggatatacccttactc--tgtaagttactgttt-tttgaattgttctttgatatac 39460139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 39454704 - 39454588
Alignment:
Q  21 acagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccactt 120  Q
    |||||||||||||| ||||||||| ||||||||||||| || |||||||| | ||  ||||||| ||| || ||| | ||| ||||||||||||||||||    
T  39454704 acagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacaccactt 39454605  T
Q  121 ccactgtcttcatgttg 137  Q
    |  || |||||||||||    
T  39454604 ctgctttcttcatgttg 39454588  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 39480438 - 39480338
Alignment:
Q  21 acagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccactt 120  Q
    |||||||||||||| ||||||||| |||||||||||||||| ||||| || | ||  |||||||||||||| ||| | ||  ||||||||| ||||||||    
T  39480438 acagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccactt 39480339  T
Q  121 c 121  Q
    |    
T  39480338 c 39480338  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 39451065 - 39450942
Alignment:
Q  21 acagttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccactt 120  Q
    ||||||| |||||| ||||||||| | |||||||||||||| ||||| || | ||  ||||||||||| |  ||| | ||||||||||||||||||||||    
T  39451065 acagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacaccactt 39450966  T
Q  121 ccactgtcttcatgttggagcaca 144  Q
    |  || ||||||| ||| ||||||    
T  39450965 ctgctttcttcatcttgaagcaca 39450942  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 39486521 - 39486406
Alignment:
Q  24 gttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttcca 123  Q
    ||||||||||| ||||||||| |||||||||||||||| || || || | ||  |||||||||||||| ||| | ||  ||||||||| |||||||||      
T  39486521 gttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagggataatcaccacttctg 39486422  T
Q  124 ctgtcttcatgttgga 139  Q
    || ||||||| |||||    
T  39486421 ctttcttcatcttgga 39486406  T

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Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 39464853 - 39464898
Alignment:
Q  258 agtatcataataaaagaaatctttgtgagtgatgtcatggctttgc 303  Q
    ||||||||||||| || |||||||||||||||||||||||||||||    
T  39464853 agtatcataataagaggaatctttgtgagtgatgtcatggctttgc 39464898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 121
Target Start/End: Original strand, 39458400 - 39458498
Alignment:
Q  23 agttattcggaggcggttatcatggttgattagaagcttggcgaactctacggcagaaactagatgacctacagcgggaaaagggataaacaccacttc 121  Q
    |||||||||||| ||||||||| |||||||||||||||| || || || | ||  |||||||||||||| ||| | ||  ||| ||||| |||||||||    
T  39458400 agttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagagataatcaccacttc 39458498  T

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