View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17751_low_15 (Length: 239)
Name: NF17751_low_15
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 11227380 - 11227519
Alignment:
| Q |
11 |
atcatcataactgtagtgatgaagatgctaattttatgttagagtaatttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
110 |
Q |
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| T |
11227380 |
atcataataactgtagtgatgaagatgctaatttcatgttagagtagtttaattatatgaacattttgtgcttttctaataagctataagtcatagttta |
11227479 |
T |
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| Q |
111 |
ttgttcttttcaactcaattaaggtttatgaactttgtac |
150 |
Q |
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| T |
11227480 |
ttgttcttttcaactcaattaaggtttatgaactttgtac |
11227519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 10128093 - 10128187
Alignment:
| Q |
58 |
tttaattatatgaacattttgtgcttttctaataagctataagtcatagtt--tattgttcttttcaactcaattaaggtttatgaactttgtac |
150 |
Q |
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| T |
10128093 |
tttaattatatgaacattatgtgtttttcatataagctatcagacatagctctttttgtactcttcaactcaattaatgtttatgaactttgtac |
10128187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 11227574 - 11227608
Alignment:
| Q |
205 |
cattccatgttttagcattttttagcaaattgtgc |
239 |
Q |
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| T |
11227574 |
cattccatgttttagcattttttagcaaattgtgc |
11227608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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