View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17751_low_7 (Length: 388)
Name: NF17751_low_7
Description: NF17751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17751_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 92 - 305
Target Start/End: Complemental strand, 37003521 - 37003307
Alignment:
| Q |
92 |
cgacttcccaccgccctagtccatacgataacaaaaatatctttccgtatattttgtctccttttacaannnnnnnngg-taaataatcattttcgtcct |
190 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||||||||||||||| |
|
|
| T |
37003521 |
cgacttcccaccatcctagtccatacgataacaaaaatatcttcccgtatattttgtctccttttacgatttttttttgataaataatcattttcgtcct |
37003422 |
T |
|
| Q |
191 |
ttaatatatagtcacgataaccttaaaacaatcattgattattcactaagatagtcaaaataatatatgacattgaaatgatatgttaatagtgttatat |
290 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
37003421 |
ttattatatagtcacaataaccttaaaacaatcattgattattcactaagatagtcaaaataatatgtgacattgaaatgatatgttaatagtgtcatat |
37003322 |
T |
|
| Q |
291 |
cagtctctcattata |
305 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
37003321 |
tagtctttcattata |
37003307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University