View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17752_high_1 (Length: 671)
Name: NF17752_high_1
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 19 - 663
Target Start/End: Complemental strand, 5592986 - 5592346
Alignment:
| Q |
19 |
gaattcgtatggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592986 |
gaattcgtatggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataa |
5592887 |
T |
|
| Q |
119 |
cattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgac |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5592886 |
cattatgtccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagccaacttggaggaattgac |
5592787 |
T |
|
| Q |
219 |
aaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592786 |
aaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagca |
5592687 |
T |
|
| Q |
319 |
acgtttatagccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttgcctttac |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5592686 |
acgtttatagccctgagcagtatgcagaaaatctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttgcttttac |
5592587 |
T |
|
| Q |
419 |
taaatgatttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592586 |
taaatgatttatgaatatcatggtttataacagaagcatttggtatat----gtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgg |
5592491 |
T |
|
| Q |
519 |
gttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttc |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5592490 |
gttaggcctattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttc |
5592391 |
T |
|
| Q |
619 |
aagcttaaatctctagtggatcatttcaataataagttctctgct |
663 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5592390 |
aagcttaaatctttagtggatcatttcaataataagttctctgct |
5592346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 19 - 384
Target Start/End: Complemental strand, 5573249 - 5572884
Alignment:
| Q |
19 |
gaattcgtatggagacatactcggctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5573249 |
gaattcgtatggagacatactcagctaaggtttaaattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataa |
5573150 |
T |
|
| Q |
119 |
cattatgttcgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgac |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
5573149 |
cattatgtccgtacagggttatgctattagcttgggattacagttaagaaatcacagagttatagtttctcaaattgctagcagacttggaggtattgac |
5573050 |
T |
|
| Q |
219 |
aaagctcaagaataccttaacaaatgcttgtattatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagca |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||| || | | |||| |
|
|
| T |
5573049 |
aaagctcaacaataccttaacaaatgcttgtattatgtgaatattggaagtaacgattacataaacaattactttcttccccaattctacccaacaagtc |
5572950 |
T |
|
| Q |
319 |
acgtttatagccctgagcagtatgcagaatctctaattgaagagttatctttgaatttacaggtat |
384 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
5572949 |
acatttatagccctgagcagtatgcagaagctctaattcaagagttatctttgaatttactggtat |
5572884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 150 - 429
Target Start/End: Complemental strand, 5586629 - 5586350
Alignment:
| Q |
150 |
ttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgt |
249 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||| | || |||||||||||||||||||||| |||||||| | |
|
|
| T |
5586629 |
ttgggattacagttaaaaaatcacaaagttataatttctcaaattgctagcagacttggaagtcttaacaaagctcaagaataccttaataaatgcttat |
5586530 |
T |
|
| Q |
250 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaatc |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || ||||||||||| ||||||| |||||| | |
|
|
| T |
5586529 |
attatgtgcatattggcagtaatgattacataaataattactttcttccccaattatatccaacaagacacatttatagccctcagcagtacgcagaagc |
5586430 |
T |
|
| Q |
350 |
tctaattgaagagttatctttgaatttacaggtatccacttgaactttgtgtttcacttttgcctttactaaatgattta |
429 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || ||||||||||||| |
|
|
| T |
5586429 |
tctaattgaagagttatctttgaatttacaggtatccccttgaactttgtgtttcacttttactttcactaaatgattta |
5586350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 427 - 663
Target Start/End: Complemental strand, 5586309 - 5586077
Alignment:
| Q |
427 |
ttatgaatatcatggtttataacagaagcatttggtatatgtacgtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcc |
526 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
5586309 |
ttatgaatatcatggtttataatagaggcatttggtacat----ggaacaggctttacatgaaattggagcaagaaaatatgtgttatctgggttaggtc |
5586214 |
T |
|
| Q |
527 |
tattgggctgcactccaagtgccatccttactcatgagacatatgggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaa |
626 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5586213 |
tattgggctgcactccaagtgccatctttactcatgggacagatgggtcttgtgttgaggagcaaaatgacatcgcatccatttttgatttcaagcttaa |
5586114 |
T |
|
| Q |
627 |
atctctagtggatcatttcaataataagttctctgct |
663 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5586113 |
atctctagtggatcatttcaataataagttctctgct |
5586077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 53 - 403
Target Start/End: Complemental strand, 5576246 - 5575896
Alignment:
| Q |
53 |
aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgttcgtacagggttatgctattagcttg |
152 |
Q |
| |
|
|||||||| ||||||||||| | | |||||||||| ||||| |||||||| ||||| | ||||||||||||| | || ||||||| || ||| || ||| |
|
|
| T |
5576246 |
aattagttattagtagatgacttgtgtatttttgtcacattgctcatacatatgccaccaaaataacattatttctgtgcagggttttgttatcagtttg |
5576147 |
T |
|
| Q |
153 |
ggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgtatt |
252 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||||||||| ||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5576146 |
ggattacagttagaaaatcacaaagttatagtttctcgaattgctagcagacttgaaggtattgacaaagctcaagaataccttagcaaatgcttgtatt |
5576047 |
T |
|
| Q |
253 |
atgtgcatattggcagtaatgattacataaataattactttcttccccaattatatctatcaagcaacgtttatagccctgagcagtatgcagaatctct |
352 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||| ||||| || | | |||| | |||||||||||||||| ||||||||| |||| |
|
|
| T |
5576046 |
atgtgaatattggcagtaatgattacataaacaattactttcgtcctcaattctacccaacaagtcaaatttatagccctgagcaatatgcagaagctct |
5575947 |
T |
|
| Q |
353 |
aattgaagagttatctttgaatttacaggtatccacttgaactttgtgttt |
403 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||| ||||||| |
|
|
| T |
5575946 |
aattcaagagttatctttaaatttattggtatccactcaaactctgtgttt |
5575896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 471 - 659
Target Start/End: Complemental strand, 5575795 - 5575607
Alignment:
| Q |
471 |
gtaacaggctttacatgaaattggagcaagaaaatatgtgttacctgggttaggcctattgggctgcactccaagtgccatccttactcatgagacatat |
570 |
Q |
| |
|
||||||| |||||||||| |||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||| ||| | |
|
|
| T |
5575795 |
gtaacagactttacatgacattggagctagaaaatatgtgttagtagggttaggccttttgggctgcacaccaagtgccatctttactcatggaacaaac |
5575696 |
T |
|
| Q |
571 |
gggtcttgtgttgaggagcaaaatgacattgcatccatttttgatttcaagcttaaatctctagtggatcatttcaataataagttctc |
659 |
Q |
| |
|
||||| || ||||| ||| |||||| | ||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5575695 |
gggtcctgcgttgatgaggaaaatgcccctgcattgattttcaatttcaagcttaaatttttagtggatcatttcaataataagttctc |
5575607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 53 - 253
Target Start/End: Complemental strand, 5582376 - 5582176
Alignment:
| Q |
53 |
aattagtttttagtagatgattagagtatttttgttacattactcatacacatgccgcaaaaataacattatgttcgtacagggttatgctattagcttg |
152 |
Q |
| |
|
||||||||||||||||| || |||| ||||||||||||| | || ||| ||||| | | |||||||||||| || |||||||||| || ||| |||||| |
|
|
| T |
5582376 |
aattagtttttagtagaggactagaatatttttgttacactgcttatatacatgtcaccaaaataacattacgtctgtacagggttctgttatcagcttg |
5582277 |
T |
|
| Q |
153 |
ggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttgtatt |
252 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||||||||| ||||||||| ||||||| || || |||||||||||||||||||||||| |
|
|
| T |
5582276 |
ggattacagttaaagaatcacaaagtaatagtttctcaaattgctagcagacttggaggtattgacagttctgaacaataccttaacaaatgcttgtatt |
5582177 |
T |
|
| Q |
253 |
a |
253 |
Q |
| |
|
| |
|
|
| T |
5582176 |
a |
5582176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 663
Target Start/End: Complemental strand, 5572712 - 5572667
Alignment:
| Q |
618 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
663 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5572712 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5572667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 618 - 663
Target Start/End: Complemental strand, 5580531 - 5580486
Alignment:
| Q |
618 |
caagcttaaatctctagtggatcatttcaataataagttctctgct |
663 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5580531 |
caagcttaaatctctagtggaacatttcaataataagttctctgct |
5580486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 149 - 256
Target Start/End: Original strand, 12052456 - 12052563
Alignment:
| Q |
149 |
cttgggattacagttaagaaatcacagagttatagtttctcaaattgctagtcaacttggaggaattgacaaagctcaagaataccttaacaaatgcttg |
248 |
Q |
| |
|
||||| ||||||||| | ||||||| || ||||||||||| ||||||||| | ||||||| | |||| ||| |||| |||||||||||||||| ||| |
|
|
| T |
12052456 |
cttggtattacagttgacaaatcaccgacttatagtttctgaaattgctactagacttggaagtcttgaaaaaactcagcaataccttaacaaatgtttg |
12052555 |
T |
|
| Q |
249 |
tattatgt |
256 |
Q |
| |
|
| |||||| |
|
|
| T |
12052556 |
tgttatgt |
12052563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 475 - 513
Target Start/End: Complemental strand, 5580614 - 5580576
Alignment:
| Q |
475 |
caggctttacatgaaattggagcaagaaaatatgtgtta |
513 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
5580614 |
caggctctacatgacattggagcaagaaaatatgtgtta |
5580576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 5613546 - 5613506
Alignment:
| Q |
243 |
tgcttgtattatgtgcatattggcagtaatgattacataaa |
283 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
5613546 |
tgcttgtattatgtgaatattggcagcaacgattacataaa |
5613506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University