View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_high_10 (Length: 441)
Name: NF17752_high_10
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_10 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 4 - 435
Target Start/End: Complemental strand, 19930883 - 19930452
Alignment:
| Q |
4 |
gtatcataggacaaaactagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactga |
103 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19930883 |
gtatcatagaacaaaactagtctccaaaactaaggccatgcctattgacacaaggggaggcccaactaagacttagaaaaggaaatcatcccttaactga |
19930784 |
T |
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| Q |
104 |
atttcaattttgcaatcagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcag |
203 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19930783 |
atttgaattttgcaatcagtttaatcttttgttttacatactttcactctactttgaacttgctcaaaggtgaactttaaaggctttgttatgatgtcag |
19930684 |
T |
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| Q |
204 |
ttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaataacta |
303 |
Q |
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| T |
19930683 |
ttacatgatcatttgtgttgcaatgaaatagcttaataactcctttaattctaaatgttcaattctatagtactatgtacctattaagagctaataacta |
19930584 |
T |
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| Q |
304 |
atcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatacaagtactcatggctttgtttgaccactgataatgtctccaccatac |
403 |
Q |
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| T |
19930583 |
atcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcatacaagtactcagggctttgtttgaccactaataatgtctccaccatac |
19930484 |
T |
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| Q |
404 |
tttcctccattcacggacctcgacgtctcaag |
435 |
Q |
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| T |
19930483 |
tttcctccattcacggacctcgacgtctcaag |
19930452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 19990316 - 19990378
Alignment:
| Q |
266 |
ttctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacac |
328 |
Q |
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| T |
19990316 |
ttctatagcactatgtgcctactaagagcttatcactcatccccacattaagcactaccacac |
19990378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 356
Target Start/End: Complemental strand, 2394 - 2324
Alignment:
| Q |
286 |
attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
356 |
Q |
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| T |
2394 |
attaagagctaaaagctcaacctcacattaagcactaccacacaccatagggatgaaaaatgtagtgcata |
2324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 4287247 - 4287337
Alignment:
| Q |
87 |
aatcatcccttaac-tgaatttcaattttgcaatcagtttaatctattgttttacatactttcactctactttgaacttgctcaaaggtga |
176 |
Q |
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| T |
4287247 |
aatcatcccttaatatgaattgcaattttgtaatcagtttaatctatcattttatacactttcaatctatcttgcagttgctaaaaggtga |
4287337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 16748708 - 16748658
Alignment:
| Q |
306 |
cctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
356 |
Q |
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| T |
16748708 |
cctcacattaagcactaccacatatcatagggacgaaaaatgtagtgcata |
16748658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 29735261 - 29735350
Alignment:
| Q |
267 |
tctatagtactatgtacctattaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
356 |
Q |
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| T |
29735261 |
tctatagcaccatgcatctattaagagctaaaagttcatgctcacattaagcattatcacacgccatagagatgagaaatgtagtgcata |
29735350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 37343834 - 37343903
Alignment:
| Q |
287 |
ttaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcata |
356 |
Q |
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| T |
37343834 |
ttaagagctaaaagctcaacctcacattaagcactgccacatgccatagggatgaaaaatgtagtgcata |
37343903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 34247079 - 34247038
Alignment:
| Q |
306 |
cctcacattaagcactaccacacttcatagagatgaaaaatg |
347 |
Q |
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| T |
34247079 |
cctcacattaagcactaccacacaccatagggatgaaaaatg |
34247038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 18983025 - 18983094
Alignment:
| Q |
286 |
attaagagctaataactaatcctcacattaagcactaccacacttcatagagatgaaaaatgaagtgcat |
355 |
Q |
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| T |
18983025 |
attaagagctaaaagctcatcctcgcattaagcactaccacacgccacagggatgaaatatgtagtgcat |
18983094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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