View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_high_17 (Length: 381)
Name: NF17752_high_17
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 149 - 364
Target Start/End: Complemental strand, 21602579 - 21602364
Alignment:
| Q |
149 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatactgcctaga |
248 |
Q |
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| T |
21602579 |
cgacgtgcacttcgaaaataattatttgatttagaaagtgagagatataagatttttatctaaatgatctattttaaatcatgtctagatactgcctaaa |
21602480 |
T |
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| Q |
249 |
catagggttaggtttgcaatcatatcaattattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggatt |
348 |
Q |
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| T |
21602479 |
catagggttaggtttgcaatcatattaattatccggtcatatgccatggaatcaataatctattttgctcagcaacggaagttgattgatacaatggatt |
21602380 |
T |
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| Q |
349 |
tcgtttcattaggcat |
364 |
Q |
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| T |
21602379 |
tcgcttcattatgcat |
21602364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 1819203 - 1819295
Alignment:
| Q |
149 |
cgacgtgcactccgaaaataattatttgatttagaaagtgagaggcataagatttttatctaaaggatctattttaaatcatgtgtagatact |
241 |
Q |
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| T |
1819203 |
cgacgtgcaatccaaaaatgattatttgatttagaaagtgtgaaacatcatatgtttatctaagggatatgttttaagccatgtgtagatact |
1819295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 31999098 - 31999026
Alignment:
| Q |
278 |
tattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
350 |
Q |
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| T |
31999098 |
tattcggtcatacgccatcaaatcaatcagctattttgcccagcaatggaagttgattgatacaatggatttc |
31999026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Complemental strand, 6269467 - 6269415
Alignment:
| Q |
287 |
atatgccatggaatcaataatctattttgctcagcatcggaagttgattgata |
339 |
Q |
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| T |
6269467 |
atatgtcattgaatcaatagactatttttctcagcattggaagttgattgata |
6269415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 350
Target Start/End: Original strand, 8934180 - 8934245
Alignment:
| Q |
285 |
tcatatgccatggaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
350 |
Q |
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| T |
8934180 |
tcatatgccatcgaatcaatatgttattttgctcagcatccaaagttgattgatacaatgtatttc |
8934245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 11917674 - 11917621
Alignment:
| Q |
297 |
gaatcaataatctattttgctcagcatcggaagttgattgatacaatggatttc |
350 |
Q |
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| T |
11917674 |
gaatcaatcatctattttgctcacgttcggaagtcgattgatacaatggatttc |
11917621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 330
Target Start/End: Original strand, 2558809 - 2558891
Alignment:
| Q |
249 |
catagggttaggtttgcaatcatat-caattattcggtcatatgccatggaatcaataatctattttgctcagcatcggaagt |
330 |
Q |
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| T |
2558809 |
catagggtctggtttgcatttatattcaactattcggttatatgtcattgaatcaattgtctattttgctcaacatcggaagt |
2558891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 318
Target Start/End: Complemental strand, 442616 - 442547
Alignment:
| Q |
250 |
atagggttaggtttgcaatcatat-caattattcggtcatatgccatggaatcaataatctattttgctc |
318 |
Q |
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|||||||||||||| || |||||| ||| |||||||||||| | ||| |||||||| | ||||||||||| |
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| T |
442616 |
atagggttaggtttacattcatattcaactattcggtcatacgacatcgaatcaatcaactattttgctc |
442547 |
T |
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