View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_high_2 (Length: 617)
Name: NF17752_high_2
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 12 - 617
Target Start/End: Complemental strand, 43505157 - 43504552
Alignment:
| Q |
12 |
caaaggtgaaatttaggaaatggtggattatgaactaaccttcttcttctttgtaatttacattctttgaactagatttccaagaggagatttcttattt |
111 |
Q |
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| T |
43505157 |
caaaggtgaaatttaggaaatggtggattatgaactaaccttcttcttctttgtaatttacattctttgaactagatttccaagaggagatttcttattt |
43505058 |
T |
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| Q |
112 |
gatttatttattttggctggatatgataggtgattcctgacacaatatcaggattgctaaatctagaggatcttaatatctcttcaaatattttgaagtc |
211 |
Q |
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| T |
43505057 |
gatttatttattttggctgcatatgataggtgattcctgacacaatatcaggattgctaaatctagaggatcttaatatctcttcaaatattttgaagtc |
43504958 |
T |
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| Q |
212 |
acttccagattcaattggctttttacaaaagttgaaaattctctcggtgtctggaaataagttgagtgctcttcctgattccatcggtcagtgcaggtaa |
311 |
Q |
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| T |
43504957 |
acttccagattcaattggctttttacaaaagttgaaaattctctctgtgtctggaaataagttgagtgctcttcctgattccatcggtcagtgcaggtaa |
43504858 |
T |
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| Q |
312 |
caagatattctacagataaattttggcaaaactactctttatattattttcgatgttgttaatttgggtaataattgtggtttaacatataagggcaaca |
411 |
Q |
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| T |
43504857 |
caagatattctacagataagtttaggcaaaactactctttatattattttcgatgttgttaatttgggtaataattgtggtttaacatataagggcaaca |
43504758 |
T |
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| Q |
412 |
ttagatttgaagtatatagtctttgcatttatatatgtctttattgaactaattttattcatagctctttaattttgcatttccatataaataaaattgt |
511 |
Q |
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| T |
43504757 |
ttagatttgaagtatatagtctttccatttatatatgtctttattgaactaattttattcatcgctctttaattttgcatttccatataaataaaattgt |
43504658 |
T |
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| Q |
512 |
taaattttattgaaaattttcgatctaggtcattgttgaactattttatttacaacttgtgacctaaaatatattgctgaagagtctcaaaacatgttac |
611 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43504657 |
taaatgttattgaaaattttcgatctaggtcattgttgaactattttatttacaacttgtgacctaaaatatattgctgaagtgtctcaaaacatgttac |
43504558 |
T |
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| Q |
612 |
aagcat |
617 |
Q |
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| T |
43504557 |
aagcat |
43504552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 138 - 310
Target Start/End: Complemental strand, 34565368 - 34565196
Alignment:
| Q |
138 |
taggtgattcctgacacaatatcaggattgctaaatctagaggatcttaatatctcttcaaatattttgaagtcacttccagattcaattggctttttac |
237 |
Q |
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||||||||||||||| ||||| ||||||| |||||| ||||| |||||| ||||| ||||| |||| | ||||| || ||||||||||| ||| ||| |
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| T |
34565368 |
taggtgattcctgactcaatagttggattgcaaaatctggaggagcttaatctctctgcaaatcatttggaatcactgcccgattcaattggatttctac |
34565269 |
T |
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| Q |
238 |
aaaagttgaaaattctctcggtgtctggaaataagttgagtgctcttcctgattccatcggtcagtgcaggta |
310 |
Q |
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||||||||||| | ||| || |||||||| ||| | | ||| ||||||||| |||| ||||||||||||| |
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| T |
34565268 |
aaaagttgaaattgctcaatgtttctggaaacaagcttactgcccttcctgatgccatttgtcagtgcaggta |
34565196 |
T |
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