View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17752_high_22 (Length: 304)
Name: NF17752_high_22
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 12528898 - 12529176
Alignment:
| Q |
18 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcgg |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
12528898 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttcccattgtagttcacaaggatcttcgg |
12528997 |
T |
|
| Q |
118 |
tttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12528998 |
tttgtcattagcaccagcagtgaccttaaatggccacaacagttgatccttctgaactatggagtcactatactttcttccaattaacctctttgcatct |
12529097 |
T |
|
| Q |
218 |
gcaaaattaaaatggtgatgtatataatatgttttttcaaaggtaacaacaaaacataaaacataacaattagaataat |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12529098 |
gcaaaattaaaatggtgatgtatataatatgttttctcaaaggtaacaacaaaacataaaacataacaattagaataat |
12529176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 223
Target Start/End: Original strand, 8546026 - 8546231
Alignment:
| Q |
18 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcgg |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||| | ||||| ||| |||||||||||||| || ||||| |
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|
| T |
8546026 |
atgcctctgcaatctctcgcatctgtgagaggatcacagatgatatttcttcagcaacaaagtgcttttcctcacccttgtagttcacaagaattgtcgg |
8546125 |
T |
|
| Q |
118 |
tttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatct |
217 |
Q |
| |
|
|||||||||| |||| | | ||||||||||||||||||||||| | ||||||||||| | ||| |||||||| || |||||||||||||||||||||||| |
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|
| T |
8546126 |
tttgtcattaacaccggaaatgaccttaaagggccacaacagtagatcattctgaacaaaggaatcactatatttccttccaattaacctctttgcatct |
8546225 |
T |
|
| Q |
218 |
gcaaaa |
223 |
Q |
| |
|
|||||| |
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|
| T |
8546226 |
gcaaaa |
8546231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 240
Target Start/End: Original strand, 8576725 - 8576943
Alignment:
| Q |
23 |
tctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcggtttgt |
122 |
Q |
| |
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||||||||||||||||||| ||| ||||||| ||| ||||||||||||||||||||| | | ||||| ||| ||||||||||||| ||| |||||||||| |
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|
| T |
8576725 |
tctgcaatctctcgcatctttgagagaatcacagatgatatttcttcagcaacaaagcgtttttcctcacctttgtagttcacaacgattgtcggtttgt |
8576824 |
T |
|
| Q |
123 |
cattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatctg-caa |
221 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||||| || || |||||||| ||||| |||||||| || ||||||||||||||||||| ||||| || |
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|
| T |
8576825 |
cattagtaccggcaatgaccttaaagggccacaaaagacaatccttctgaacaatggaatcactatatttccttccaattaacctctttgtatctgtaaa |
8576924 |
T |
|
| Q |
222 |
aattaaaatggtgatgtat |
240 |
Q |
| |
|
|||||| |||||||||||| |
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|
| T |
8576925 |
aattaacatggtgatgtat |
8576943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 8582094 - 8582313
Alignment:
| Q |
18 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcgg |
117 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | ||| |||||||||||||||| |||||| | ||||||||| ||||||||||||| ||| ||||| |
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|
| T |
8582094 |
atgcctctgcaatctctcgcatctgtgtcagaataacagatgatatttcttcagcaagaaagtgtttttccttacccttgtagttcacaacgattgtcgg |
8582193 |
T |
|
| Q |
118 |
tttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatct |
217 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||||||| || || ||||| ||||| |||||||| || |||||||||||||||||||||||| |
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|
| T |
8582194 |
tttgtcattagcacctgcggtgaccttgaagggccacaacttgatatccttttgaacaatggaatcactatatttccttccaattaacctctttgcatct |
8582293 |
T |
|
| Q |
218 |
g-caaaattaaaatggtgat |
236 |
Q |
| |
|
| ||||||||||||||||| |
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|
| T |
8582294 |
gaaaaaattaaaatggtgat |
8582313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 8559727 - 8559977
Alignment:
| Q |
18 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcgg |
117 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||| ||||||||||| ||||||| || | |||||| || |||| |||||||||| ||| || |
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|
| T |
8559727 |
atgcttctgcaatctctcgcatctgtgtgagaatcatagctgatatttcttcggcaacaagatgcttttccttgcccctgtatttcacaaggaccgttgg |
8559826 |
T |
|
| Q |
118 |
tttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatct |
217 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||||||| ||| | || |||||||| ||||| || || |||||||||||||||||||||||| |
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|
| T |
8559827 |
tttgtcattatcgccagcgatgaccttaaagggccacaacagtacatcactttggactatggaatcactgtatttccttccaattaacctctttgcatct |
8559926 |
T |
|
| Q |
218 |
gc-aaaattaaaatggtgatgtatataatatgt-tttttcaaaggtaacaa |
266 |
Q |
| |
|
|| |||||||||||||| ||| || || ||| | ||||||||| ||||||| |
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| T |
8559927 |
gcaaaaattaaaatggtcatgcatgtattatttgtttttcaaatgtaacaa |
8559977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 8570705 - 8570925
Alignment:
| Q |
18 |
atgcatctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcgg |
117 |
Q |
| |
|
|||| ||||||||||||||||||| ||| ||||||| ||| |||||||||||||| ||||| | | ||||||||| |||| ||||||| ||| || || |
|
|
| T |
8570705 |
atgcttctgcaatctctcgcatctttgagagaatcacagatgatatttcttcagctacaaaacgtttttccttacccatgtacttcacaatgattgttgg |
8570804 |
T |
|
| Q |
118 |
tttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatct |
217 |
Q |
| |
|
||||| |||||||| | ||||||||||||||||||| ||| | || ||||||| ||||| ||||||||||| |||||||||||||||||| ||||| |
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|
| T |
8570805 |
tttgttgttagcaccggagatgaccttaaagggccacaaaagtcgatccatctgaacgatggaatcactatacttccttccaattaacctctttacatct |
8570904 |
T |
|
| Q |
218 |
gc-aaaattaaaatggtgatg |
237 |
Q |
| |
|
|| ||||||||||| |||||| |
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|
| T |
8570905 |
gcaaaaattaaaatagtgatg |
8570925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 29577438 - 29577241
Alignment:
| Q |
23 |
tctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcggtttgt |
122 |
Q |
| |
|
||||||||||| |||||| ||| || |||||||| |||||||| |||||||||||| | || || || ||||| || ||||||||| | || |||| |
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|
| T |
29577438 |
tctgcaatctcctgcatctttgagaggatcatagacgatatttcctcagcaacaaagcacttctctttgcccttgtacttaacaaggatcttgggattgt |
29577339 |
T |
|
| Q |
123 |
cattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatctgca |
220 |
Q |
| |
|
||| ||| |||| | |||||||||||||||||||| | || ||| ||| ||||| ||||| | || ||||||||||||||||| ||||||||| |
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|
| T |
29577338 |
catcagctccaggaatgaccttaaagggccacaactttatatctttccgaataatggaatcactgaatttccttccaattaacctcttcgcatctgca |
29577241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 29581610 - 29581394
Alignment:
| Q |
23 |
tctgcaatctctcgcatctgtgatagaatcatagaggatatttcttcagcaacaaagtgatgttccttaccattgtagttcacaaggatcgtcggtttgt |
122 |
Q |
| |
|
|||||||| || |||||| ||| || |||||||| |||||||| ||||||||||| | || | ||| ||||| || ||||||||| | || |||| |
|
|
| T |
29581610 |
tctgcaatatcatgcatctttgagaggatcatagatgatatttcctcagcaacaaacctcttctcttcacccttgtacttaacaaggatcatgggattgt |
29581511 |
T |
|
| Q |
123 |
cattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatctgcaaa |
222 |
Q |
| |
|
||| || |||||| ||||||||||||||||| | |||| ||||| || || |||||||| |||||||| ||||||||||||||||||||| | |
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|
| T |
29581510 |
catcagtgccagcaactaccttaaagggccacaaatttatatcatcctgaataatagaatcactatattttcttccgattaacctctttgcatctgcata |
29581411 |
T |
|
| Q |
223 |
attaaaatggtgatgta |
239 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
29581410 |
aataaaatgttgatgta |
29581394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 220
Target Start/End: Original strand, 8538528 - 8538632
Alignment:
| Q |
116 |
ggtttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcat |
215 |
Q |
| |
|
||||| ||||||||| ||||| | ||||| ||||||||||||||| |||||||||| | || |||||||| |||||||||| |||||||| |||| |
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|
| T |
8538528 |
ggtttatcattagcatcagcatttaccttgaagggccacaacagtaaatcattctgaataacagaatcactatattttcttccaaccaacctcttagcat |
8538627 |
T |
|
| Q |
216 |
ctgca |
220 |
Q |
| |
|
||||| |
|
|
| T |
8538628 |
ctgca |
8538632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 8567245 - 8567301
Alignment:
| Q |
182 |
tcactatactttcttccaattaacctctttgcatctgc-aaaattaaaatggtgatg |
237 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
8567245 |
tcactatattttcttccagttaacctctttgcatctgcaaaaattaaaatagtgatg |
8567301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 218
Target Start/End: Original strand, 8602490 - 8602568
Alignment:
| Q |
140 |
accttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctctttgcatctg |
218 |
Q |
| |
|
|||||||| ||||||||| || |||||||||| | || |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
8602490 |
accttaaatggccacaaccgtatgtcattctgaatgacagaatcactatatttccttccaattaacctctttgcatctg |
8602568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 16661674 - 16661566
Alignment:
| Q |
110 |
atcgtcggtttgtcattagcaccagcagtgaccttaaagggccacaacagttgctcattctgaactatggagtcactatactttcttccaattaacctct |
209 |
Q |
| |
|
||||| |||||||||||| |||||||| | ||||| || |||||||||||| || || ||||| | || ||||||| | || || ||||||||||||| |
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|
| T |
16661674 |
atcgtaggtttgtcattaacaccagcaataaccttgaacggccacaacagtatatctttttgaacaacggggtcactaaatttcctaccaattaacctct |
16661575 |
T |
|
| Q |
210 |
ttgcatctg |
218 |
Q |
| |
|
| ||||||| |
|
|
| T |
16661574 |
tagcatctg |
16661566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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