View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_high_23 (Length: 286)
Name: NF17752_high_23
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_23 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 71 - 267
Target Start/End: Complemental strand, 43010750 - 43010554
Alignment:
| Q |
71 |
ttaattgatgctcaaagtatagaggaaaagcggagcaattatcttaatggtaagtggagtaattaatgaaatcggattcatctgtatatattcacatgta |
170 |
Q |
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| T |
43010750 |
ttaattgatgctcaaagtatagaggaaaagcggagcaattatcttaatggtaagtggagtaattaatgaaatcggattcatctgtatatattcacatgta |
43010651 |
T |
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| Q |
171 |
cttatgattcaatatctgtatgtgccttgtagtttctttctaagaggaggggtannnnnnnnnnnngagaggaaagaaggggtatttatgaacctgt |
267 |
Q |
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| T |
43010650 |
cttatgattcaatatctgtatgtgccttgtagtttctttctaagaggaggggtatttttcttttttgagaggaaagaaggggtatttatgaacctgt |
43010554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 43010779 - 43010737
Alignment:
| Q |
15 |
tatattagaaaacgataggggaaataaaattaattgatgctca |
57 |
Q |
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| T |
43010779 |
tatattagaaaacaataggggaaataaaattaattgatgctca |
43010737 |
T |
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