View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17752_high_28 (Length: 239)
Name: NF17752_high_28
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 30 - 218
Target Start/End: Original strand, 1090944 - 1091134
Alignment:
| Q |
30 |
caaaatcccgaataattttgaacacaaatatatcatatcgaattgcataaataatcaatgaaccaattcatat--aaaaaattaatcattcatcccaaat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
1090944 |
caaaatcccgaataattttgaacacaaatatatcatatcgaattgcataaataatcaatgaaccaattcatatataaaaaattaatcaatcatcccaaat |
1091043 |
T |
|
| Q |
128 |
catacaaaatacttaaagaatagactaattacctcagtagttgttacaagagaggagttgccgctgctggtgaagtttgttgagagtaggg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1091044 |
catacaaaatacttaaagaatagactaattaccttagtagttgttacaagagaggaggtgccgctgccggtgaagtttgttaagagtaggg |
1091134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University