View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_high_29 (Length: 237)
Name: NF17752_high_29
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 32695595 - 32695823
Alignment:
| Q |
1 |
tgggggagccattctcatcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataaca |
100 |
Q |
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| T |
32695595 |
tgggggagccattctcatcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgatcacaataaagccctagttgtgtataaca |
32695694 |
T |
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| Q |
101 |
acaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttacta |
200 |
Q |
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| T |
32695695 |
acaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttacta |
32695794 |
T |
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| Q |
201 |
tggttatggttatggagatgatgatgatg |
229 |
Q |
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| T |
32695795 |
tggttatggttatggagatgatgatgatg |
32695823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 32679529 - 32679728
Alignment:
| Q |
1 |
tgggggagccattctcatcgtcactccaaagaagatggtttaattgaagaaggtggtggaaattgtgatgaacacaagaaagccctagttgtgtataaca |
100 |
Q |
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| T |
32679529 |
tgggggagccattctcatcatcacttcaaagaagattgtttaattgaagaaggtggc---aattttgatgatcacaataaagccctagttgtgtataaca |
32679625 |
T |
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| Q |
101 |
acaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaagttgtagatgaacaacaagaccaagaagatggatatgatagttacta |
200 |
Q |
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| T |
32679626 |
acaaaggtca------cagttatgaagcgttgcgaaatccaagtgaaacacaagttgtggatgaacaacaagaccaaggagatggatatgatagttacta |
32679719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 32686606 - 32686744
Alignment:
| Q |
55 |
ggtggaaattgtgatgaacacaagaaagccctagttgtgtataacaacaatgctcatcatcgcacttatgaagcattgcaaaatccaagtgaaacacaag |
154 |
Q |
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||||| |||| |||||| || || | |||| | ||||||||| ||||||||||||| ||||||||| || |||| |||||||||||||||||||| |
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| T |
32686606 |
ggtggcaattatgatgatcataatagagccatggttgtgtattacaacaatgctca------cacttatgaggcgttgcgaaatccaagtgaaacacaag |
32686699 |
T |
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| Q |
155 |
ttgtagatgaacaacaagaccaagaagatggatatgatagttactatg |
202 |
Q |
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| T |
32686700 |
ttgtggatg---aacaagatcaagaagatggacatggtggttactatg |
32686744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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