View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17752_high_6 (Length: 534)

Name: NF17752_high_6
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17752_high_6
NF17752_high_6
[»] chr7 (10 HSPs)
chr7 (143-518)||(29446301-29446676)
chr7 (204-365)||(29480288-29480449)
chr7 (80-122)||(29446767-29446809)
chr7 (207-325)||(29477205-29477323)
chr7 (410-499)||(29480149-29480238)
chr7 (226-331)||(29894548-29894653)
chr7 (204-337)||(29105907-29106040)
chr7 (207-335)||(29454931-29455059)
chr7 (207-335)||(29922884-29923012)
chr7 (227-299)||(47479653-47479725)
[»] scaffold0242 (2 HSPs)
scaffold0242 (207-325)||(14556-14674)
scaffold0242 (207-325)||(23391-23509)
[»] chr1 (3 HSPs)
chr1 (245-322)||(4015737-4015814)
chr1 (204-285)||(4367394-4367475)
chr1 (207-295)||(10218144-10218232)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 143 - 518
Target Start/End: Complemental strand, 29446676 - 29446301
Alignment:
Q  143 ccctaacttcatccccactcgtaaaagagaaagagttatgtttggattaccgtccctttcagatgatctcatcgccgaggttttttccttccttcccgtc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29446676 ccctaacttcatccccactcgtaaaagagaaagagttatgtttggattaccatccctttcagatgatctcatcgccgaggttttttccttccttcccgtc 29446577  T
Q  243 aaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacaccttcgtcaaattacacctcaacagatcagcaactcgga 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29446576 aaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacaccttcgtcaaattacacctcaacagatcagcaactcgga 29446477  T
Q  343 atcctcttttcacactagtcacaagtcacatcacaaatgattgcactgattttgacggtggatatgggatggattgcagtgtcattccttactcgttgaa 442  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29446476 atcctctttttacactagtcacaagtcacatcacaaatgattgcactgattttgacggtggatatgggatggattgcagtgtcattccttactcgtttaa 29446377  T
Q  443 tagtttaattcagaattcatctttcactctttccgtggatccttactatcatttgagctatcaaggatgttcttct 518  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29446376 tcgtttaattcagaattcatctttcactctttccgtggatccttactatcatttgagctatcaaggatgttcttct 29446301  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 204 - 365
Target Start/End: Complemental strand, 29480449 - 29480288
Alignment:
Q  204 gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataaca 303  Q
    |||||||||||| | ||| |  |||||||||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||| ||||||| ||  ||    
T  29480449 gatgatctcatcacagagttactttccttccttcccgtcaaatctcctgttcgattcaagtgtgtctgtaagtcttggaaaaccctaatttccaatccca 29480350  T
Q  304 ccttcgtcaaattacacctcaacagatcagcaactcggaatcctcttttcacactagtcaca 365  Q
     ||| || ||||||||||||||   |||  |||| || ||||| || |||||||||||||||    
T  29480349 actttgtaaaattacacctcaatcaatcctcaacacgaaatcccctcttcacactagtcaca 29480288  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 29446809 - 29446767
Alignment:
Q  80 ggacagtttgttatattttgttacatttatatatataaataat 122  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29446809 ggacagtttgttatattttgttacatttatatatataaataat 29446767  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 29477323 - 29477205
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 306  Q
    ||||||||||| ||| |  |||||||||||||||||||||||||||||||| |||| ||||| |  |||| ||||||| ||| ||| || |||  || ||    
T  29477323 gatctcatcgcagagttactttccttccttcccgtcaaatctcttgttcgactcaaatgtgttagcaagtcttggaaatccctaatctctgatcccagct 29477224  T
Q  307 tcgtcaaattacacctcaa 325  Q
    | || ||||||||||||||    
T  29477223 ttgtgaaattacacctcaa 29477205  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 410 - 499
Target Start/End: Complemental strand, 29480238 - 29480149
Alignment:
Q  410 gatggattgcagtgtcattccttactcgttgaatagtttaattcagaattcatctttcactctttccgtggatccttactatcatttgag 499  Q
    ||||| || ||||||| |||||||||||||||| ||||||||| ||||  | |  ||||| |||||||| ||||| ||||||||||||||    
T  29480238 gatgggtttcagtgtcgttccttactcgttgaacagtttaattgagaacccgttgttcaccctttccgtagatccgtactatcatttgag 29480149  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 29894548 - 29894653
Alignment:
Q  226 tttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacaccttcgtcaaattacacctcaa 325  Q
    ||||||| ||||| || | |||||||||||||||||  ||||| |  |||| ||||||||||| ||| |  |||  ||||||||||||||||||||||||    
T  29894548 tttccttacttccggttatatctcttgttcgattcacttgtgttagcaagtcttggaaaaccctaatctttgatcccaccttcgtcaaattacacctcaa 29894647  T
Q  326 cagatc 331  Q
     |||||    
T  29894648 tagatc 29894653  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 204 - 337
Target Start/End: Original strand, 29105907 - 29106040
Alignment:
Q  204 gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataaca 303  Q
    |||||||||||||| || ||| |||||||||||||||| | || |||| ||||||| | || |||||  |||| ||||||||| |  |||||| ||        
T  29105907 gatgatctcatcgcagaagttctttccttccttcccgttatatttcttcttcgatttaggtctgtcagcaagtcttggaaaactcttatttccaatcctg 29106006  T
Q  304 ccttcgtcaaattacacctcaacagatcagcaac 337  Q
    ||||||| ||||| || ||||| |||||||||||    
T  29106007 ccttcgtgaaattgcatctcaagagatcagcaac 29106040  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 29455059 - 29454931
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 306  Q
    ||||||||||| |||||  |||| |  ||||||||||||  |||| ||| ||||| ||| || ||||||||||||||| ||| ||||| ||| | |  ||    
T  29455059 gatctcatcgctgaggtactttcttatcttcccgtcaaaattcttcttcaattcaggtgcgtgaataagtattggaaagccctaattttcgacaccgtct 29454960  T
Q  307 tcgtcaaattacacctcaacagatcagca 335  Q
    || |||||||||| ||||| || ||||||    
T  29454959 tcatcaaattacatctcaataggtcagca 29454931  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 29923012 - 29922884
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 306  Q
    ||||||||||| || ||  ||||||| ||||| || ||| ||||| ||||||||||| |||| | ||||| ||||||||  |  || ||||||  ||| |    
T  29923012 gatctcatcgctgaagtactttcctttcttccggtgaaacctcttcttcgattcaagagtgttagtaagtcttggaaaatactcatctccgatcccacat 29922913  T
Q  307 tcgtcaaattacacctcaacagatcagca 335  Q
    |||| ||||| |||||||| |||||||||    
T  29922912 tcgtgaaattgcacctcaagagatcagca 29922884  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 299
Target Start/End: Complemental strand, 47479725 - 47479653
Alignment:
Q  227 ttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgat 299  Q
    |||||| ||||||||  ||| |||| |||||||||  ||||| | ||||| ||||||||||| ||||||||||    
T  47479725 ttcctttcttcccgttgaatttcttattcgattcagttgtgtaagtaagtcttggaaaaccctaatttccgat 47479653  T

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Target: scaffold0242 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 14674 - 14556
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 306  Q
    ||||||||||| ||| |  |||||||||||||||| |||||||||||||||||||| ||||| || |||  ||||||||||| ||| || |||  ||| |    
T  14674 gatctcatcgcagagttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccactt 14575  T
Q  307 tcgtcaaattacacctcaa 325  Q
    | || ||||||||||||||    
T  14574 ttgtgaaattacacctcaa 14556  T

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Target: scaffold0242; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 325
Target Start/End: Complemental strand, 23509 - 23391
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacacct 306  Q
    ||||||||||| ||| |  |||||||||||||||| |||||||||||||||||||| ||||| || |||  ||||||||||| ||| || |||  ||| |    
T  23509 gatctcatcgcagagttactttccttccttcccgtgaaatctcttgttcgattcaaatgtgttaacaaggcttggaaaaccctaatatctgatcccactt 23410  T
Q  307 tcgtcaaattacacctcaa 325  Q
    | || ||||||||||||||    
T  23409 ttgtgaaattacacctcaa 23391  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 322
Target Start/End: Complemental strand, 4015814 - 4015737
Alignment:
Q  245 atctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttccgataacaccttcgtcaaattacacct 322  Q
    ||||||||||||||||| |||||| | ||||| ||||||||||| ||||||||||  |||||| || ||||| |||||    
T  4015814 atctcttgttcgattcaggtgtgtgagtaagtcttggaaaaccctaatttccgattccacctttgtgaaattgcacct 4015737  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 4367475 - 4367394
Alignment:
Q  204 gatgatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaa 285  Q
    ||||||||||| || |||||  |||| || || ||||| |||| |||| ||||||||| |||||||| ||||| ||||||||    
T  4367475 gatgatctcattgctgaggtactttcgtttctccccgttaaatatcttcttcgattcaggtgtgtcagtaagtcttggaaaa 4367394  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 10218144 - 10218232
Alignment:
Q  207 gatctcatcgccgaggttttttccttccttcccgtcaaatctcttgttcgattcaagtgtgtcaataagtattggaaaacccgaatttc 295  Q
    |||||| | ||||||||  ||||||| ||||| || |||||||||||| | |||| |||||| | ||| | ||||||||||| ||||||    
T  10218144 gatctcgttgccgaggtactttcctttcttccggtgaaatctcttgtttgcttcaggtgtgtgagtaaatcttggaaaaccctaatttc 10218232  T

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