View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_10 (Length: 477)
Name: NF17752_low_10
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 55270304 - 55269830
Alignment:
| Q |
1 |
tgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaaggtag |
96 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55270304 |
tgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaaggtgg |
55270205 |
T |
|
| Q |
97 |
tgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270204 |
tgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaac |
55270105 |
T |
|
| Q |
197 |
tacaattactagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggag |
292 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55270104 |
tacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggag |
55270009 |
T |
|
| Q |
293 |
ttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55270008 |
ttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagct |
55269909 |
T |
|
| Q |
393 |
ttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtc |
471 |
Q |
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| T |
55269908 |
ttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtc |
55269830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 55263440 - 55262966
Alignment:
| Q |
1 |
tgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctat----gttcttatggatcatatttacataggctttgggcttgaaggtag |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55263440 |
tgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaaggtgg |
55263341 |
T |
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| Q |
97 |
tgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaac |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263340 |
tgaggaaggttgataatcctgagaacaaggtgatgtttcctcatgcctttttctttgcaatgtgactgacattctaatcagaaagcatagattatacaac |
55263241 |
T |
|
| Q |
197 |
tacaattactagaaacacatgtttt----tgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggag |
292 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55263240 |
tacaat----agaaacacatgttttaatttgttgcatgtcctacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggag |
55263145 |
T |
|
| Q |
293 |
ttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatttgaccttgaagcttaaactagct |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
55263144 |
ttgacatataattatggtgtcaccgaatactctaagggaactgcttatgcacaggttagttcataagttaaattatatgaccttgaagcttaaactagct |
55263045 |
T |
|
| Q |
393 |
ttctgcgcagctctgtcctgttaatggtaaaatatgtttcatgtgtctatgacagattgctgttggtactgatgatgtc |
471 |
Q |
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|||| || | ||| | || ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
55263044 |
ttcttcgtgtttatgtaccattgatggtaaaatatgtttcatgtgtctataacagattgccattggtactgatgatgtc |
55262966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 353
Target Start/End: Complemental strand, 8301226 - 8301107
Alignment:
| Q |
234 |
tacagtacactattgctatacttgggtataaagaggaggacgacgcaactgtgttggagttgacatataattatggtgtcaccgaatactctaagggaac |
333 |
Q |
| |
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||||||||||| | ||||| |||||||| ||||||| |||| | | |||||||||| |||||||||| ||||||||||| |||||| | ||||||| |
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| T |
8301226 |
tacagtacactttagctatgcttgggtacgcagaggagcacgagaccattgtgttggagctgacatataactatggtgtcactgaatacaccaagggaaa |
8301127 |
T |
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| Q |
334 |
tgcttatgcacaggttagtt |
353 |
Q |
| |
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|||||||||||||||||||| |
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| T |
8301126 |
tgcttatgcacaggttagtt |
8301107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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