View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17752_low_14 (Length: 432)
Name: NF17752_low_14
Description: NF17752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17752_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 148 - 419
Target Start/End: Original strand, 7210605 - 7210875
Alignment:
| Q |
148 |
ggtttatgttgtcattgactaaggaagcatgttttgtaactattttcaagaaccaaactagtcctctaacatcttttctattttcaatccttcttttctt |
247 |
Q |
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| T |
7210605 |
ggtttatgttgtcattgactaaggaagcatgttttgtaactattttcaagaaccaaactagtcctctaacctcttttctattttcaatctttcttttctt |
7210704 |
T |
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| Q |
248 |
tcctctcttgttttaaaagagaatatactaactgtttgtttcatgcacttgttttgattcttctcctttcatggcttcttcaaatctttgacagtttacc |
347 |
Q |
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| T |
7210705 |
tcctctcttgttttaaaagagaatatactaactgtttgtttcatgcacttg-tttgattcttctcctttcatggcttcttcaaatctttcacagtttacc |
7210803 |
T |
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| Q |
348 |
ttggtaagtcacactcctaaaaatgcatttgtaatgtaacacataaattaaattaaatgcataacatatttg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7210804 |
ttggtaagtcacactcctaaaaatgcatttgtaatgtaacacataaattaaattaaatgcataacatatttg |
7210875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 7210461 - 7210562
Alignment:
| Q |
12 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggtaagagaaacatgacatacacttttgattttgtttc |
111 |
Q |
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| T |
7210461 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggtaagagaaacatgacatacacttttgattttgtttc |
7210560 |
T |
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| Q |
112 |
aa |
113 |
Q |
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|| |
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| T |
7210561 |
aa |
7210562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 76
Target Start/End: Complemental strand, 4847041 - 4846977
Alignment:
| Q |
12 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggt |
76 |
Q |
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| T |
4847041 |
atgaagcacatttatgggataacagttgcaagaaggaagggcaaacaaggaaaggaagacaaggt |
4846977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 47753097 - 47753161
Alignment:
| Q |
12 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggt |
76 |
Q |
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| T |
47753097 |
atgaagcacatttatgggataacagttgcaagaaggaaggacaaacaagaaaaggaagacaaggt |
47753161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 53235986 - 53235921
Alignment:
| Q |
12 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggta |
77 |
Q |
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||||||||||| ||||||| ||||||||||||| ||||| |||| ||||||||||| ||||||| |
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| T |
53235986 |
atgaagcacatctatgggacaatagttgcagaagggaaggacaaagtaggaaaggaagacaaggta |
53235921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 40189491 - 40189559
Alignment:
| Q |
12 |
atgaagcacatttatgggataatagttgcagaaaagaagggcaaacaaggaaaggaaggcaaggtaaga |
80 |
Q |
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||||||| ||||||||||| || ||||||| |||||||| |||| || |||||||| |||||||||| |
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| T |
40189491 |
atgaagctcatttatgggacaacagttgcaagaaagaaggccaaagcagaaaaggaagacaaggtaaga |
40189559 |
T |
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